GBrowse Details

Vigan.02G305400.01

Basic Information:
Name: Vigan.02G305400.01
Multiple alignment
Variant Information
Position: Chr02:42192169..42195668 (+ strand)
Length: 3500
Functional Information:
Description: Similar to Uncharacterized protein. [I1L1H7, Glycine max]
GO: Biological Process: translational initiation (GO:0006413)
Molecular Function: translation initiation factor activity (GO:0003743)
InterPro: Translation initiation factor SUI1 (IPR001950)
Density-regulated protein DRP1 (IPR005873)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:125.43,79.02,46.61,40.11,60.53,95.10,29.28,43.55
Arabidopsis thaliana homolog: AT5G11900.1
Automatic updates:
Name: NM_001248332 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative translation machinery-associated protein (LOC100306708), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:42192169..42192436 (+ strand)
Length: 268
Type: five_prime_UTR
Position: Chr02:42192437..42192584 (+ strand)
Length: 148
Type: CDS
Position: Chr02:42192704..42192793 (+ strand)
Length: 90
Type: CDS
Position: Chr02:42192990..42193042 (+ strand)
Length: 53
Type: CDS
Position: Chr02:42193154..42193235 (+ strand)
Length: 82
Type: CDS
Position: Chr02:42193559..42193626 (+ strand)
Length: 68
Type: CDS
Position: Chr02:42194353..42194436 (+ strand)
Length: 84
Type: CDS
Position: Chr02:42195121..42195177 (+ strand)
Length: 57
Type: CDS
Position: Chr02:42195178..42195668 (+ strand)
Length: 491
Type: three_prime_UTR


>Vigan.02G305400.01
CAAAATTTAC ACACGAACTC CATTGAAACA AATGAAAGCA CAGGGGTTAA AGTGCAATTA ATTAAATTTT TTATTTATTT
TTCTTTAAAT TGAGAGACTC CCTACACGAC ACCGTACCAG GGAATCATCA AGGTCCCTCC CTTCACCGCG CCATCGATCA
CCATCGTCTT TTCTCTGCGT TGCAAAAACG CACCGTTTTG TTAGTGTTTT CGTTCTCAAG AAAATTGCAA AAGTGAAGCA
GGGTTTGCAA GCTTGTGTTT AAACAACAAT GGCGGAGAAA CCCCAACCGG TTCGGGTGCT GTACTGTGGG GTGTGCAGTT
TGCCTCCCGA ATACTGCGAA TTTGGATCCG ATTTCGAAAA ATGCAAACCC TGGTTGATCC AAAACGCCCC TGACCTATAC
CCTAATCTTC TTAAAGAGGC AAATGATAAG GGAGCTGATA ACGTTGCTGA CAAGCTGCAA AGTACCGGTA TATCGTCAGG
AGCTGGTGAT GGAGCTGCTT CCTCAGCACC GAAGCAAGAA GAAGTGAAGC GTCTTCCGGG TGGGAAGATA AAGAAGAAGG
ATAAGCAAGA GGTGGTTATT GAAAAGGTTG TACGTAACAA GCGAAAGTGT ATCACCACTG TGAAGGGCCT GGAGCTTTTC
GGTGTCAAGC TCAGCGATGC TTCCAAGAAA CTTGGGAAAA AGTTTGCTAC AGGAGCCTCT GTTGTCAAGG GACCAACCGA
GAAAGAACAA ATTGATGTTC AAGGGGATAT AGCTTATGAC ATCGTGGAAT TCATTACAGA TACATGGCCT GATGTTTCAG
AAACAGCAAT TTTCTTTATA GAAGATGGGA GAAAGGTTCC AGCTGCTTGA TTTTGATATC CTGGCATTAA AACTTCGTAC
TGGTTGCTAG ACTCTTCAAT ATTACTGTAA TCCCCCAATG TCCCCTTTTT CTTACCATAT CCCCCAAAAA AAGAACATAG
TTTGGTCTCG ATGGACATCA GCATGTGTAC TTTTAGTTTA ACGACAATTT AACTAGTGAT GTGTGTAAAG AGGCAAGAGG
AAAAAAAAGG TTCCTTTTCA TCAATTTTGT ATTTTCATTG AGGTTTTAAG CCATATATAT AAGTTGTGGG GATAAGGCTC
TGCTTGCATG AAATTGCCAG TCGCAGAATC CTTTTACATA AATTTATAAT AATGCAGGCT ATGGATTCTG AACATAAAAC
GGGAATTTAG ATAAATTAAT CTGTGTCATT TATCATTTCG TTCTGTTCGG ACTTCGGTTC GAAGGAAGGG GATGAGGGGC
GTGTGTCCCA TTCAAAGTTG AACGCGTCCT TGTTAGTAAA AGTTTGATTT GTTTGTACAC A

>Vigan.02G305400.01
ATGGCGGAGA AACCCCAACC GGTTCGGGTG CTGTACTGTG GGGTGTGCAG TTTGCCTCCC GAATACTGCG AATTTGGATC
CGATTTCGAA AAATGCAAAC CCTGGTTGAT CCAAAACGCC CCTGACCTAT ACCCTAATCT TCTTAAAGAG GCAAATGATA
AGGGAGCTGA TAACGTTGCT GACAAGCTGC AAAGTACCGG TATATCGTCA GGAGCTGGTG ATGGAGCTGC TTCCTCAGCA
CCGAAGCAAG AAGAAGTGAA GCGTCTTCCG GGTGGGAAGA TAAAGAAGAA GGATAAGCAA GAGGTGGTTA TTGAAAAGGT
TGTACGTAAC AAGCGAAAGT GTATCACCAC TGTGAAGGGC CTGGAGCTTT TCGGTGTCAA GCTCAGCGAT GCTTCCAAGA
AACTTGGGAA AAAGTTTGCT ACAGGAGCCT CTGTTGTCAA GGGACCAACC GAGAAAGAAC AAATTGATGT TCAAGGGGAT
ATAGCTTATG ACATCGTGGA ATTCATTACA GATACATGGC CTGATGTTTC AGAAACAGCA ATTTTCTTTA TAGAAGATGG
GAGAAAGGTT CCAGCTGCTT GA

>Vigan.02G305400.01
MAEKPQPVRV LYCGVCSLPP EYCEFGSDFE KCKPWLIQNA PDLYPNLLKE ANDKGADNVA DKLQSTGISS GAGDGAASSA
PKQEEVKRLP GGKIKKKDKQ EVVIEKVVRN KRKCITTVKG LELFGVKLSD ASKKLGKKFA TGASVVKGPT EKEQIDVQGD
IAYDIVEFIT DTWPDVSETA IFFIEDGRKV PAA*