GBrowse Details

Vigan.02G305700.01

Basic Information:
Name: Vigan.02G305700.01
Multiple alignment
Variant Information
Position: Chr02:42226203..42232597 (+ strand)
Length: 6395
Functional Information:
Description: Similar to Uncharacterized protein. [I1L1H2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: WD40 repeat (IPR001680)
WD40/YVTN repeat-like-containing domain (IPR015943)
WD40-repeat-containing domain (IPR017986)
Histone-binding protein RBBP4, N-terminal (IPR022052)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:135.66,122.36,39.74,47.09,43.88,48.32,44.30,31.37
Arabidopsis thaliana homolog: AT2G19520.1, AT4G29730.1
Automatic updates:
Name: NM_001289270 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WD-40 repeat-containing protein MSI4-like (FVE), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:42226203..42226278 (+ strand)
Length: 76
Type: five_prime_UTR
Position: Chr02:42226279..42226535 (+ strand)
Length: 257
Type: CDS
Position: Chr02:42226622..42226685 (+ strand)
Length: 64
Type: CDS
Position: Chr02:42226891..42226977 (+ strand)
Length: 87
Type: CDS
Position: Chr02:42227214..42227276 (+ strand)
Length: 63
Type: CDS
Position: Chr02:42227517..42227582 (+ strand)
Length: 66
Type: CDS
Position: Chr02:42227660..42227734 (+ strand)
Length: 75
Type: CDS
Position: Chr02:42228786..42228861 (+ strand)
Length: 76
Type: CDS
Position: Chr02:42228951..42229146 (+ strand)
Length: 196
Type: CDS
Position: Chr02:42229580..42229661 (+ strand)
Length: 82
Type: CDS
Position: Chr02:42229945..42230018 (+ strand)
Length: 74
Type: CDS
Position: Chr02:42230150..42230261 (+ strand)
Length: 112
Type: CDS
Position: Chr02:42230360..42230434 (+ strand)
Length: 75
Type: CDS
Position: Chr02:42230534..42230610 (+ strand)
Length: 77
Type: CDS
Position: Chr02:42231429..42231528 (+ strand)
Length: 100
Type: CDS
Position: Chr02:42232107..42232214 (+ strand)
Length: 108
Type: CDS
Position: Chr02:42232215..42232597 (+ strand)
Length: 383
Type: three_prime_UTR


>Vigan.02G305700.01
CTTGTAGGTG TGCAACAGAA AGAGAGCAGA GAGACAGAAC AGTGAGAGTT TGTAAGGAAG AAGAGTGAGA ACTGAGATGG
AGACTCCTCC TCAGCAAGGT GTGGTGAAGA AGAAGGAGAC AAGAGGTCGA AAACCTAAGC CAAAGGACGA CAAGAGAGAT
GAACATTCCA AGACAAAGGA AGGGAGAAAA ACGCAGCAAT ATCAGCAGCA ACAACAGCAG CAGCAGCAAC AACCTTCCGT
CGATGAGAAA TACACGCAAT GGAAGTCTCT CGTCCCTGTC CTCTATGACT GGCTTGCTAA CCACAACCTC GTTTGGCCCT
CTCTCTCTTG CCGGTGGGGT CCTCAGCTTG AACAAGCCAC TTACAAGAAT CGTCAGCGGC TCTATCTCTC CGAACAGACT
GATGGTAGCG TGCCAAATAC TCTGGTGATT GCGAATTGCG AGGTTGTGAA GCCTAGGGTT GCGGCTGCAG AGCACATTTC
ACAGTTTAAT GAAGAGGCAC GGTCCCCGTT TGTGAAGAAG TTCAAGACCA TCATACATCC TGGCGAGGTG AACAGAATTA
GGGAATTACC ACAAAATTCC AAGATAGTGG CAACACATAC AGATAGCCCT GATGTCCTTG TCTGGGATGT TGAGAATCAA
CCTAACCGTC ATGCTGTCCT TGGAGCTACA AACTCTCGGC CTGATTTGAT ATTGACTGGA CACCAAGACA ATGCAGAATT
TGCTCTTGCT ATGTGTCCAA CTGAGCCCTA TGTTCTTTCA GGAGGAAAGG ACAAAACGGT GGTATTGTGG AGTATTGAGG
ACCATATAAC ATCTGCTGCC ACAGGTGGAT CAATTATCAA GCCAAACTCT AAATCTGGAG AAGCCAATGA TAAAGCTGCT
GAAAGCCCTT CTGTCGGGCC ACGAGGTATC TACTGTGGGC ATGAGGATAC TGTTGAAGAT GTGACTTTCT GTCCATCCAG
TGCACAGGAG TTCTGTAGTG TTGGAGATGA TTCTTGTCTC ATCTTATGGG ATGCACGTGT TGGGTCTAGC CCTGTGGTTA
AGGTTGAAAA AGCTCATAAT GCTGATCTTC ACTGTGTTGA TTGGAATCCA CATGATGATA ATCTGATTCT TACTGGGTCA
GCAGATAATT CTGTTCGCAT GTTTGATCGT CGCAATCTCA CCACTAACGG AGTTGGGTCG CCCATCCATA AATTTGAGGG
TCACAAAGCT GCTGTTCTTT GTGTTCAGTG GTCTCCAGAC AAATCATCTG TATTTGGAAG TTCAGCTGAG GATGGTCTCT
TGAACATTTG GGACTATGAG AAGGTTGGTA AAAAGATAGA GCGATCTGGA AAATCAATAA GTGCTCCTCC AGGGTTGTTT
TTCCAACATG CTGGTCATAG AGATAAAGTA GTCGATTTTC ATTGGAATGC ATTTGATCCA TGGACAATTG TTAGCGTCTC
TGATGACTGT GAAAGTACTG GTGGAGGGGG CACATTGCAG ATATGGCGCA TGAGTGATTT GATCTACAGA CCAGAAGAAG
AGGTTTTAGC GGAGCTGGAG AAATTCAAAT CTCATGTGGT GGCATGCGCT TCCAAGTCTG AAAAATGAGC AAAAAGAGTT
CAGTTATTCT TGCTGTTGTA TAACTCAATC TTTATTTGTG ATTCATGTTT CTGAGCATTT TAAAAACCAC CCACATGGGA
TTGGAGTAGG GAAACTTAGA TTAACATAGA ACTGACAAGT GTTTGTGGTG TAGTATTCCT TAAATTTTAC TGTTTCTGTT
CATGATCCTT CTCGTGTTGT GCACACTGTT CAATCCTCCA ACCACTGAAC CGATTATGCA TTCTTAATCC ATGAACCTGT
GAAGTTAAGT TGGTTGGCAA ATCGGTTGCT TTTATGTTTG GTGTGTGCAG CCATAGCTAG ATGATGGTAT TTTAGATTCT
GAAAATAGAT TTTGCAATTA TTATACAAAT ATCACAAACC TTTTCACTCG A

>Vigan.02G305700.01
ATGGAGACTC CTCCTCAGCA AGGTGTGGTG AAGAAGAAGG AGACAAGAGG TCGAAAACCT AAGCCAAAGG ACGACAAGAG
AGATGAACAT TCCAAGACAA AGGAAGGGAG AAAAACGCAG CAATATCAGC AGCAACAACA GCAGCAGCAG CAACAACCTT
CCGTCGATGA GAAATACACG CAATGGAAGT CTCTCGTCCC TGTCCTCTAT GACTGGCTTG CTAACCACAA CCTCGTTTGG
CCCTCTCTCT CTTGCCGGTG GGGTCCTCAG CTTGAACAAG CCACTTACAA GAATCGTCAG CGGCTCTATC TCTCCGAACA
GACTGATGGT AGCGTGCCAA ATACTCTGGT GATTGCGAAT TGCGAGGTTG TGAAGCCTAG GGTTGCGGCT GCAGAGCACA
TTTCACAGTT TAATGAAGAG GCACGGTCCC CGTTTGTGAA GAAGTTCAAG ACCATCATAC ATCCTGGCGA GGTGAACAGA
ATTAGGGAAT TACCACAAAA TTCCAAGATA GTGGCAACAC ATACAGATAG CCCTGATGTC CTTGTCTGGG ATGTTGAGAA
TCAACCTAAC CGTCATGCTG TCCTTGGAGC TACAAACTCT CGGCCTGATT TGATATTGAC TGGACACCAA GACAATGCAG
AATTTGCTCT TGCTATGTGT CCAACTGAGC CCTATGTTCT TTCAGGAGGA AAGGACAAAA CGGTGGTATT GTGGAGTATT
GAGGACCATA TAACATCTGC TGCCACAGGT GGATCAATTA TCAAGCCAAA CTCTAAATCT GGAGAAGCCA ATGATAAAGC
TGCTGAAAGC CCTTCTGTCG GGCCACGAGG TATCTACTGT GGGCATGAGG ATACTGTTGA AGATGTGACT TTCTGTCCAT
CCAGTGCACA GGAGTTCTGT AGTGTTGGAG ATGATTCTTG TCTCATCTTA TGGGATGCAC GTGTTGGGTC TAGCCCTGTG
GTTAAGGTTG AAAAAGCTCA TAATGCTGAT CTTCACTGTG TTGATTGGAA TCCACATGAT GATAATCTGA TTCTTACTGG
GTCAGCAGAT AATTCTGTTC GCATGTTTGA TCGTCGCAAT CTCACCACTA ACGGAGTTGG GTCGCCCATC CATAAATTTG
AGGGTCACAA AGCTGCTGTT CTTTGTGTTC AGTGGTCTCC AGACAAATCA TCTGTATTTG GAAGTTCAGC TGAGGATGGT
CTCTTGAACA TTTGGGACTA TGAGAAGGTT GGTAAAAAGA TAGAGCGATC TGGAAAATCA ATAAGTGCTC CTCCAGGGTT
GTTTTTCCAA CATGCTGGTC ATAGAGATAA AGTAGTCGAT TTTCATTGGA ATGCATTTGA TCCATGGACA ATTGTTAGCG
TCTCTGATGA CTGTGAAAGT ACTGGTGGAG GGGGCACATT GCAGATATGG CGCATGAGTG ATTTGATCTA CAGACCAGAA
GAAGAGGTTT TAGCGGAGCT GGAGAAATTC AAATCTCATG TGGTGGCATG CGCTTCCAAG TCTGAAAAAT GA

>Vigan.02G305700.01
METPPQQGVV KKKETRGRKP KPKDDKRDEH SKTKEGRKTQ QYQQQQQQQQ QQPSVDEKYT QWKSLVPVLY DWLANHNLVW
PSLSCRWGPQ LEQATYKNRQ RLYLSEQTDG SVPNTLVIAN CEVVKPRVAA AEHISQFNEE ARSPFVKKFK TIIHPGEVNR
IRELPQNSKI VATHTDSPDV LVWDVENQPN RHAVLGATNS RPDLILTGHQ DNAEFALAMC PTEPYVLSGG KDKTVVLWSI
EDHITSAATG GSIIKPNSKS GEANDKAAES PSVGPRGIYC GHEDTVEDVT FCPSSAQEFC SVGDDSCLIL WDARVGSSPV
VKVEKAHNAD LHCVDWNPHD DNLILTGSAD NSVRMFDRRN LTTNGVGSPI HKFEGHKAAV LCVQWSPDKS SVFGSSAEDG
LLNIWDYEKV GKKIERSGKS ISAPPGLFFQ HAGHRDKVVD FHWNAFDPWT IVSVSDDCES TGGGGTLQIW RMSDLIYRPE
EEVLAELEKF KSHVVACASK SEK*