GBrowse Details

Vigan.02G310000.01

Basic Information:
Name: Vigan.02G310000.01
Multiple alignment
Variant Information
Position: Chr02:42692827..42696828 (+ strand)
Length: 4002
Functional Information:
Description: Similar to cDNA clone:J023134C17, full insert sequence. [Q7XS49, Oryza sativa subsp. japonica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.25,29.98,24.60,20.49,40.63,42.21,24.21,17.65
Arabidopsis thaliana homolog: AT4G29960.1
Automatic updates:
Name: NM_001255810 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100815317 (LOC100815317), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001361606 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100813503 (LOC100813503), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:42692827..42692887 (+ strand)
Length: 61
Type: five_prime_UTR
Position: Chr02:42692888..42692977 (+ strand)
Length: 90
Type: CDS
Position: Chr02:42693471..42693688 (+ strand)
Length: 218
Type: CDS
Position: Chr02:42695520..42695756 (+ strand)
Length: 237
Type: CDS
Position: Chr02:42695979..42696127 (+ strand)
Length: 149
Type: CDS
Position: Chr02:42696401..42696594 (+ strand)
Length: 194
Type: CDS
Position: Chr02:42696595..42696828 (+ strand)
Length: 234
Type: three_prime_UTR


>Vigan.02G310000.01
TTTCATTTTA TTCATTTTCA GGTTTTGAGA CCCAAACACA CTGAACCGAA CGTGATCAAC AATGGCAGAA AACCCTCCCG
AAACGGTGCC GTCTAGCTCA CAACCTTCTT CGTCTTCTTC GTCTCAGAAA TTGCCTCAAG ATTCTCCTCA GGTCCCTGCA
TTTTCGAATC TTCCGCCGTA TTTGGGTGGA TATTATCAAA TGATTCCTGG TATGTACCCT GCACTTGTTC CAGGGTTAAC
TCTGCCGCAA CATGAGGAAC ATGGGAACCG CGGAGCTGGC ATATATGCTG TTCCTGTTAA CTCCTTTGAT AGACAAGTTA
CTGGACTTCC ATGCAACACC CTGATTCCGC TGACTTACCG CATACCCACC AGTAGGCCAA GTTCTGAAGC TGTTGCTGCC
AGTGAAAATC AGGGGCAAGC GGGACAGCAA CCTCAACAGC AGCAGCCTGC ACCTCAAAGA CAAGTTGTTG TTAGGAGATT
TCAAATTGCA TTTCAAATTG ATTTATTGCT TATGTTGAAG CTGGCAGCTG TGATCTTTTT ATTTAACCAA GATGGATCAA
GGCAGAGGCT TATTGTCCTT GTGTTCTTTG CTGCTATTGT ATATTTATAC CAAACTGGAG CTTTGACACC AATAATAAGA
TGGCTTTCAC GAGGTATGCA GAGAGCAGCA GCACCTCCTC ATCCAGCAAG ACCTGCAGCC AGAGCTGAAA ATGTTCCTCC
ACCCAGGCAA GAGGGTGATA ATGTTACTCC AGCAGAGGGT CAACCTGAAG CCGAGAATGG GAACCAGCCT GCAAATGAAG
CAGACCGGGC AGTTGGGAAT GAAAATGTTG CAGAAGTTGG AGGAGTAAAT GGTGGGAATC AGTGGTGGGG CATTGTAAAG
GAGATTCAGA TGATTGTCTT TGGATTTATC ACTTCCCTTC TCCCTGGGTT CCACAACCAT ATGGATTGAA CTATATTTTG
TAGTTTACAA GGTTTGTGAA ATTGACATCT ATGGTCTGAG AGACCATGCC CTGAAATAAA AATGTATAGC ATCAGAAGTT
CCAAGCGTCA TAACTAATAC ATACATAGTT AGGTGCTACT ATAATCCAGA GGAAGATATG GTGCAACTAT AGGGTGCCGT
TTTTGTATCA TTACTTGGTT TGTTCATAAA ACAGCTTCCA TAGTAGGACG TTAGATTTTT TTT

>Vigan.02G310000.01
ATGGCAGAAA ACCCTCCCGA AACGGTGCCG TCTAGCTCAC AACCTTCTTC GTCTTCTTCG TCTCAGAAAT TGCCTCAAGA
TTCTCCTCAG GTCCCTGCAT TTTCGAATCT TCCGCCGTAT TTGGGTGGAT ATTATCAAAT GATTCCTGGT ATGTACCCTG
CACTTGTTCC AGGGTTAACT CTGCCGCAAC ATGAGGAACA TGGGAACCGC GGAGCTGGCA TATATGCTGT TCCTGTTAAC
TCCTTTGATA GACAAGTTAC TGGACTTCCA TGCAACACCC TGATTCCGCT GACTTACCGC ATACCCACCA GTAGGCCAAG
TTCTGAAGCT GTTGCTGCCA GTGAAAATCA GGGGCAAGCG GGACAGCAAC CTCAACAGCA GCAGCCTGCA CCTCAAAGAC
AAGTTGTTGT TAGGAGATTT CAAATTGCAT TTCAAATTGA TTTATTGCTT ATGTTGAAGC TGGCAGCTGT GATCTTTTTA
TTTAACCAAG ATGGATCAAG GCAGAGGCTT ATTGTCCTTG TGTTCTTTGC TGCTATTGTA TATTTATACC AAACTGGAGC
TTTGACACCA ATAATAAGAT GGCTTTCACG AGGTATGCAG AGAGCAGCAG CACCTCCTCA TCCAGCAAGA CCTGCAGCCA
GAGCTGAAAA TGTTCCTCCA CCCAGGCAAG AGGGTGATAA TGTTACTCCA GCAGAGGGTC AACCTGAAGC CGAGAATGGG
AACCAGCCTG CAAATGAAGC AGACCGGGCA GTTGGGAATG AAAATGTTGC AGAAGTTGGA GGAGTAAATG GTGGGAATCA
GTGGTGGGGC ATTGTAAAGG AGATTCAGAT GATTGTCTTT GGATTTATCA CTTCCCTTCT CCCTGGGTTC CACAACCATA
TGGATTGA

>Vigan.02G310000.01
MAENPPETVP SSSQPSSSSS SQKLPQDSPQ VPAFSNLPPY LGGYYQMIPG MYPALVPGLT LPQHEEHGNR GAGIYAVPVN
SFDRQVTGLP CNTLIPLTYR IPTSRPSSEA VAASENQGQA GQQPQQQQPA PQRQVVVRRF QIAFQIDLLL MLKLAAVIFL
FNQDGSRQRL IVLVFFAAIV YLYQTGALTP IIRWLSRGMQ RAAAPPHPAR PAARAENVPP PRQEGDNVTP AEGQPEAENG
NQPANEADRA VGNENVAEVG GVNGGNQWWG IVKEIQMIVF GFITSLLPGF HNHMD*