GBrowse Details

Vigan.02G319600.01

Basic Information:
Name: Vigan.02G319600.01
Multiple alignment
Variant Information
Position: Chr02:43754734..43760549 (+ strand)
Length: 5816
Functional Information:
Description: Similar to Uncharacterized protein. [K7LBV6, Glycine max]
GO: Biological Process: biosynthetic process (GO:0009058)
Molecular Function: catalytic activity (GO:0003824)
InterPro: Cytidyltransferase-like domain (IPR004821)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.51,9.75,10.00,28.55,11.33,5.20,12.24,18.11
Automatic updates:
Name: NM_001253131 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max choline-phosphate cytidylyltransferase B-like (LOC100791886), transcript variant 1, mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:43754734..43754845 (+ strand)
Length: 112
Type: five_prime_UTR
Position: Chr02:43754846..43754973 (+ strand)
Length: 128
Type: CDS
Position: Chr02:43755255..43755368 (+ strand)
Length: 114
Type: CDS
Position: Chr02:43756845..43756940 (+ strand)
Length: 96
Type: CDS
Position: Chr02:43758148..43758190 (+ strand)
Length: 43
Type: CDS
Position: Chr02:43758470..43758625 (+ strand)
Length: 156
Type: CDS
Position: Chr02:43758760..43758840 (+ strand)
Length: 81
Type: CDS
Position: Chr02:43759836..43759946 (+ strand)
Length: 111
Type: CDS
Position: Chr02:43760094..43760213 (+ strand)
Length: 120
Type: CDS
Position: Chr02:43760214..43760549 (+ strand)
Length: 336
Type: three_prime_UTR


>Vigan.02G319600.01
GGGCGGGGCT CAGGTGGGTC CAGAGAAACG GTTGGGAAGA TCATAGCCTG ATCTTGGACC TCATTCACAC GCACTCTCTT
TTATTTATTC ACTCAGAAGG AGAGAAATAG TGATGGAAGA AGAAGAGCAA AAAGTTATGG AAAAGAGTTG CAAGGAAACT
CCTGTTCGAG TTTATGCTGA CGGGATTTAT GATCTCTTTC ACTTCGGTCA TGCCCGTTCT CTTGAGCAGG CTAAGAAACT
GTTTCCGAAC ACTTATCTCC TTGTTGGATG CTGCAATGAT GAGATCACCC ATAAGTACAA GGGCAAAACT GTTATGACTG
AGAAGGAACG CTATGAGTCT CTTCGCCACT GCAGGTGGGT TGATGAAGTT ATTCCAGATG CGCCATGGGT AATCACCAAG
GAGTTCCTTG ACAAGCATCA AATTGACTAT GTGGCACATG ATAGTCTTCC TTATGCTGAT GCAAGTGGAG CTGGAAAGGA
TGTGTATGAA TATGTTAAGT CTGTTGGAAA ATTTAAGGAA ACAAAGCGGA CTGATGGAAT TTCTACTTCT GATATTATAA
TGAGAATTAT CAAAGATTAT AATCAATATG TAATGCGTAA TTTGGACCGT GGTTACACAA GAAAGGAACT AGGTGTCAGC
TATGTGAAGG AGAAGAGATT GAGAATGAAC ATGGGACTTA AAAAATTGCA GGAGAGAGTG AAGAAACAAC AAGAGAAAGT
GGGAAAAAAG ATTCAAACGG TGGGAAAAAT TGCTGGAATG CACCCTAATG AATGGGTTGA AAATGCAGAT CGATTGGTTG
CTGGATTTCT TGAGATGTTT GAAGAAGGCT GCCATAAAAT GGGAACAGCA ATCAGAGACA GAATACAAGA ACAATTGAGG
GCACAACAGC TGAAATCTCT TCTTTATGAT GAGTGGGATG ATGATGATTC ATTCTATGAT GGTGAATACT ACTCCGACTA
AAGGGGCAAA TAAACTTTTG TGTTTCTGGA TTAAGGATCA TTCCTATATA TAACTAAGCT ACCCTTTCTG TAAGGAGAAT
TACTTGAAGG ATACTGGATT TCATACATGC AAGATGGTTT TGTACATTAT TTTCCTTTGT ACATAGTTTG ATTTGATTAT
ATTTTCTTGT TATAAGAGAA TGTAACTTTT AAGAGTACTG GTGGGACAGA CCTTCAATCA GACCTTTCTT CTTTACTCTC
TTTTTTCTGT TACTATGCTA AGGGTTTCTT CACAAGGAAG GAAATCACAT GTGTTTCTTC TTAAGGACTT AACATCTATT
GAAAGTATTA GTTTCTG

>Vigan.02G319600.01
ATGGAAGAAG AAGAGCAAAA AGTTATGGAA AAGAGTTGCA AGGAAACTCC TGTTCGAGTT TATGCTGACG GGATTTATGA
TCTCTTTCAC TTCGGTCATG CCCGTTCTCT TGAGCAGGCT AAGAAACTGT TTCCGAACAC TTATCTCCTT GTTGGATGCT
GCAATGATGA GATCACCCAT AAGTACAAGG GCAAAACTGT TATGACTGAG AAGGAACGCT ATGAGTCTCT TCGCCACTGC
AGGTGGGTTG ATGAAGTTAT TCCAGATGCG CCATGGGTAA TCACCAAGGA GTTCCTTGAC AAGCATCAAA TTGACTATGT
GGCACATGAT AGTCTTCCTT ATGCTGATGC AAGTGGAGCT GGAAAGGATG TGTATGAATA TGTTAAGTCT GTTGGAAAAT
TTAAGGAAAC AAAGCGGACT GATGGAATTT CTACTTCTGA TATTATAATG AGAATTATCA AAGATTATAA TCAATATGTA
ATGCGTAATT TGGACCGTGG TTACACAAGA AAGGAACTAG GTGTCAGCTA TGTGAAGGAG AAGAGATTGA GAATGAACAT
GGGACTTAAA AAATTGCAGG AGAGAGTGAA GAAACAACAA GAGAAAGTGG GAAAAAAGAT TCAAACGGTG GGAAAAATTG
CTGGAATGCA CCCTAATGAA TGGGTTGAAA ATGCAGATCG ATTGGTTGCT GGATTTCTTG AGATGTTTGA AGAAGGCTGC
CATAAAATGG GAACAGCAAT CAGAGACAGA ATACAAGAAC AATTGAGGGC ACAACAGCTG AAATCTCTTC TTTATGATGA
GTGGGATGAT GATGATTCAT TCTATGATGG TGAATACTAC TCCGACTAA

>Vigan.02G319600.01
MEEEEQKVME KSCKETPVRV YADGIYDLFH FGHARSLEQA KKLFPNTYLL VGCCNDEITH KYKGKTVMTE KERYESLRHC
RWVDEVIPDA PWVITKEFLD KHQIDYVAHD SLPYADASGA GKDVYEYVKS VGKFKETKRT DGISTSDIIM RIIKDYNQYV
MRNLDRGYTR KELGVSYVKE KRLRMNMGLK KLQERVKKQQ EKVGKKIQTV GKIAGMHPNE WVENADRLVA GFLEMFEEGC
HKMGTAIRDR IQEQLRAQQL KSLLYDEWDD DDSFYDGEYY SD*