GBrowse Details

Vigan.02G320300.01

Basic Information:
Name: Vigan.02G320300.01
Multiple alignment
Variant Information
Position: Chr02:43805994..43810628 (+ strand)
Length: 4635
Functional Information:
Description: Similar to allantoate amidohydrolase. [A6YS26, Phaseolus vulgaris]
GO: Biological Process: proteolysis (GO:0006508)
Biological Process: metabolic process (GO:0008152)
Molecular Function: metallopeptidase activity (GO:0008237)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines (GO:0016813)
InterPro: ArgE/DapE/ACY1/CPG2/YscS, conserved site (IPR001261)
Peptidase M20 (IPR002933)
Amidase, hydantoinase/carbamoylase (IPR010158)
Peptidase M20, dimerisation domain (IPR011650)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:155.21,148.02,36.32,95.82,6.04,33.39,14.14,47.80
Arabidopsis thaliana homolog: AT4G20070.1
Automatic updates:
Name: NM_001249634 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max allantoate amidohydrolase (AAH), transcript variant 1, mRNA.
PubMed ID: 19129162 NCBI(pubmed)
18065556 NCBI(pubmed)
Status: Known Variant
Name: NM_001360355 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max allantoate deiminase 2 (AAH2), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:43805994..43806273 (+ strand)
Length: 280
Type: five_prime_UTR
Position: Chr02:43806274..43806370 (+ strand)
Length: 97
Type: CDS
Position: Chr02:43807282..43807373 (+ strand)
Length: 92
Type: CDS
Position: Chr02:43807630..43807733 (+ strand)
Length: 104
Type: CDS
Position: Chr02:43807805..43807889 (+ strand)
Length: 85
Type: CDS
Position: Chr02:43807977..43808093 (+ strand)
Length: 117
Type: CDS
Position: Chr02:43808281..43808390 (+ strand)
Length: 110
Type: CDS
Position: Chr02:43808469..43808574 (+ strand)
Length: 106
Type: CDS
Position: Chr02:43808680..43808766 (+ strand)
Length: 87
Type: CDS
Position: Chr02:43809287..43809529 (+ strand)
Length: 243
Type: CDS
Position: Chr02:43809651..43809776 (+ strand)
Length: 126
Type: CDS
Position: Chr02:43809866..43810027 (+ strand)
Length: 162
Type: CDS
Position: Chr02:43810111..43810233 (+ strand)
Length: 123
Type: CDS
Position: Chr02:43810234..43810628 (+ strand)
Length: 395
Type: three_prime_UTR


>Vigan.02G320300.01
TGACACTTGC ACTTACAGAG AGAGGAGCGA GAGAGGAGAG AGAAGAGAGG GGTCCCACCA CAATGGACAT CGCTCGTGCA
TGTCACGGGC TCGTTGGTGA GCCTTTGAGC CGCCAACACT TCCACCACAA ATTCATATTA TTCCCTGTGC TTCACTCGGT
CCTTGAGATT GGGAAGCATT GGTACCTAGC TAAGCTAAAG CTAAACCCTT CAGTTTTAGC TTAGCTTCTT GTGCTTTTGC
TTTCTCCATC CATAAACAAC CACCACCACC ACCCACCACC ATGTTTTCCA CCACCACCAC CACCACAACT TTTCTTCACT
CTTGCTTCCT TCTCTCCTGC CTCCTGTCAG CTCTTTCTTG TGTTTCCATG TTCTCTGGTA TTGAGACAGG AGATTTAGAA
AAAAGAGATG ATTTGTTTCC ACAGATTCTA AGAGACGAGG CAGTGGCGAG GCTTTATGAG CTTGGGAAGG TGAGTGATGG
TAAAAATTAT TTGGAGAGGA CATTCTTGAG TCCTGCATCC ATGAGGGCAA TTAGTCTTAT TCGTAGATGG ATGGAGGATG
CTGGTTTGAG AACTTGGGTG GACCAAATGG GAAATGTACA CGGTCGAGTC GAAGGTGCAA ATGCAAATGC TGAAGCTTTA
TTGATTGGTT CTCACATGGA CACTGTTGTT GATGCTGGGA TGTTTGATGG ATCCCTAGGA ATAGTCTCTG CAATATCTGC
CTTGAAGGCC ATGCATGTCA ATGGAAAGCT GGAAAAGCTA AAGCGCCCCG TTGAGGTGAT TGCATTTAGT GATGAAGAGG
GTGTCAGATT TCAAACTACT TTCTTGGGCA GTGGTGCTAT AGCTGGTATC TTGCCTGCTA CAACATTAGA GATATCTGAT
AAGAGGGATG TAATGATAAA AGATTTTCTT AAGGAGAACT CAATAGACAT TACAGAGGAA AGTCTTTTGA AGCTCAAGTA
TGACCCAAAA TCTGTTTGGG GTTATGTTGA GGTTCACATT GAGCAGGGTC CTGTGCTAGA ACAAGTTGGT TTCCCACTTG
GTGTGGTTAA AGGCATAGCT GGGCAGACAC GATTGAAGGT TACAGTTAGA GGATCACAAG GTCATGCTGG AACAGTCCCT
ATGTCCATGC GCCAGGATCC TATGGCAGCT GCTGCGGAAC AAATTGTGGT CTTGGAAAGC CTCTGTAAAC ATCCTGAAGA
ATACCTTTCT TATGATGCTC ATTGCAGTGA TTCAACAGTG AAATCACTGT CAAGCTCACT TGTCTGTACT GTTGGAGAGA
TATCAACATG GCCAAGTGCC AGTAATGTCA TTCCAGGCCA GGTTACATAT ACGGTTGACA TACGAGCAAT TGATGACCTT
GGACGTGAGG CTGTTATCTA TGATTTGTCA AAACAAATTT ACCAAATATG TGACAAGCGT TCAGTTTCCT GCATTATTGA
ACACAAGCAT GATGCAGGTG CTGTGATTTG TGATTCTGAT CTGAGTTCTC AGCTCAAGTC TGCAACTTAT TCTGCACTAA
AGAAGATGGA GGGTGACATT CAGGACGAAG TGCCAACATT AATGAGTGGA GCAGGCCATG ATGCAATGGC AATATCTCAC
TTAACAAAGG TGGGAATGCT GTTTGTGCGA TGTCGTGGAG GCATCAGTCA CTCTCCACAA GAACATGTGC TAGATAACGA
TGTCTGGGCA GCTGGTTTAG CAACCTTGTC ATTTCTGGAA AATCTATCAT AAGTGATATG ATAACTGTGT AAAGCAATAA
ATAGATATTA TAGCTTGTAA TTATAGGTTA ATTTATTGAG TTAATTCATG AGTTAACTCT TTTTTCTTTA GTTGTTTGTG
TCTTCTTATA GTTGTGTAAT TGAATTTTTG GTTTTAGTTA TCCTGTTATC AGGAAACGGC TCAAGTTGTT CTGCATGTTC
TTTGCCACTG TCGGATAAAG CTTATGACTG ATTTTACTTT TTACTTTAAT AGGTATATAT AATGTTAGTG TAAATGTTTA
TGTATGGCTT GGGAAGTAGT TATCATGAAA GTGTAAACCA AAGCTATCAT ACTCATACAC AAGGAGTTGA TGAAAGATGA
TAATATCAAA TATTGGTGAA TGCACGGATT ATTTGTTCCC ACACAAA

>Vigan.02G320300.01
ATGTTTTCCA CCACCACCAC CACCACAACT TTTCTTCACT CTTGCTTCCT TCTCTCCTGC CTCCTGTCAG CTCTTTCTTG
TGTTTCCATG TTCTCTGGTA TTGAGACAGG AGATTTAGAA AAAAGAGATG ATTTGTTTCC ACAGATTCTA AGAGACGAGG
CAGTGGCGAG GCTTTATGAG CTTGGGAAGG TGAGTGATGG TAAAAATTAT TTGGAGAGGA CATTCTTGAG TCCTGCATCC
ATGAGGGCAA TTAGTCTTAT TCGTAGATGG ATGGAGGATG CTGGTTTGAG AACTTGGGTG GACCAAATGG GAAATGTACA
CGGTCGAGTC GAAGGTGCAA ATGCAAATGC TGAAGCTTTA TTGATTGGTT CTCACATGGA CACTGTTGTT GATGCTGGGA
TGTTTGATGG ATCCCTAGGA ATAGTCTCTG CAATATCTGC CTTGAAGGCC ATGCATGTCA ATGGAAAGCT GGAAAAGCTA
AAGCGCCCCG TTGAGGTGAT TGCATTTAGT GATGAAGAGG GTGTCAGATT TCAAACTACT TTCTTGGGCA GTGGTGCTAT
AGCTGGTATC TTGCCTGCTA CAACATTAGA GATATCTGAT AAGAGGGATG TAATGATAAA AGATTTTCTT AAGGAGAACT
CAATAGACAT TACAGAGGAA AGTCTTTTGA AGCTCAAGTA TGACCCAAAA TCTGTTTGGG GTTATGTTGA GGTTCACATT
GAGCAGGGTC CTGTGCTAGA ACAAGTTGGT TTCCCACTTG GTGTGGTTAA AGGCATAGCT GGGCAGACAC GATTGAAGGT
TACAGTTAGA GGATCACAAG GTCATGCTGG AACAGTCCCT ATGTCCATGC GCCAGGATCC TATGGCAGCT GCTGCGGAAC
AAATTGTGGT CTTGGAAAGC CTCTGTAAAC ATCCTGAAGA ATACCTTTCT TATGATGCTC ATTGCAGTGA TTCAACAGTG
AAATCACTGT CAAGCTCACT TGTCTGTACT GTTGGAGAGA TATCAACATG GCCAAGTGCC AGTAATGTCA TTCCAGGCCA
GGTTACATAT ACGGTTGACA TACGAGCAAT TGATGACCTT GGACGTGAGG CTGTTATCTA TGATTTGTCA AAACAAATTT
ACCAAATATG TGACAAGCGT TCAGTTTCCT GCATTATTGA ACACAAGCAT GATGCAGGTG CTGTGATTTG TGATTCTGAT
CTGAGTTCTC AGCTCAAGTC TGCAACTTAT TCTGCACTAA AGAAGATGGA GGGTGACATT CAGGACGAAG TGCCAACATT
AATGAGTGGA GCAGGCCATG ATGCAATGGC AATATCTCAC TTAACAAAGG TGGGAATGCT GTTTGTGCGA TGTCGTGGAG
GCATCAGTCA CTCTCCACAA GAACATGTGC TAGATAACGA TGTCTGGGCA GCTGGTTTAG CAACCTTGTC ATTTCTGGAA
AATCTATCAT AA

>Vigan.02G320300.01
MFSTTTTTTT FLHSCFLLSC LLSALSCVSM FSGIETGDLE KRDDLFPQIL RDEAVARLYE LGKVSDGKNY LERTFLSPAS
MRAISLIRRW MEDAGLRTWV DQMGNVHGRV EGANANAEAL LIGSHMDTVV DAGMFDGSLG IVSAISALKA MHVNGKLEKL
KRPVEVIAFS DEEGVRFQTT FLGSGAIAGI LPATTLEISD KRDVMIKDFL KENSIDITEE SLLKLKYDPK SVWGYVEVHI
EQGPVLEQVG FPLGVVKGIA GQTRLKVTVR GSQGHAGTVP MSMRQDPMAA AAEQIVVLES LCKHPEEYLS YDAHCSDSTV
KSLSSSLVCT VGEISTWPSA SNVIPGQVTY TVDIRAIDDL GREAVIYDLS KQIYQICDKR SVSCIIEHKH DAGAVICDSD
LSSQLKSATY SALKKMEGDI QDEVPTLMSG AGHDAMAISH LTKVGMLFVR CRGGISHSPQ EHVLDNDVWA AGLATLSFLE
NLS*