VIGGS:GBrowse

Vigan.02G322600.01

Basic Information:

Name:	Vigan.02G322600.01 Multiple alignment Variant Information
Position:	Chr02:43961968..43963580 (- strand)
Length:	1613

Functional Information:

Description:	Similar to peroxidase 7-like. [XP_003547406.1, Glycine max]
GO:	Biological Process: response to oxidative stress (GO:0006979)
	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: peroxidase activity (GO:0004601)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Plant peroxidase (IPR000823)
	Haem peroxidase, plant/fungal/bacterial (IPR002016)
	Haem peroxidase (IPR010255)
	Peroxidases heam-ligand binding site (IPR019793)
	Peroxidase, active site (IPR019794)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.83,0.09,0.03,0.00,0.00,6.36,0.03
Arabidopsis thaliana homolog:	AT1G30870.1

Structure :

[show][hide]Parts:

Position:	Chr02:43961968..43962068 (- strand)
Length:	101
Type:	three_prime_UTR

Position:	Chr02:43962069..43962475 (- strand)
Length:	407
Type:	CDS

Position:	Chr02:43962823..43963165 (- strand)
Length:	343
Type:	CDS

Position:	Chr02:43963257..43963577 (- strand)
Length:	321
Type:	CDS

Position:	Chr02:43963578..43963580 (- strand)
Length:	3
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.02G322600.01
AATATGTGTA ACTCTTCGCT CCCATTGTTT CTTCTTTTGG TTCTCTGCAT CGTTTTAGCC TCAGCTGATC CTTATTACGG
AAACTCTGAC TATAAACCTT CATCATCTTC ATACACAACC ACAACAAGTG ACACTGTCTT CTCTCTTAAA GTACCAACGT
TAGATGAAAC CACATTCGAT AATCTTCTAT CCTTTGGTTA CTACCGTAAA AGCTGCCCCC AGTTTGAGTC CATTCTACAC
AACAAAGTGA AAGAATGGAT CAAGAAGGAC TACAGTTTAG GAGCTAGTCT CATGAGGCTC CACTTCCATG ATTGCTCTGT
CAGGGGATGT GACGGGTCTA TTCTGTTGAA GCATGATGGA AGTGAGAGGA CAGCAGAAGC TAGCAAGACA CTGAGAGGGT
TTGAAGTGGT GGATGATATC AAGACAGAAT TAGAGAAACA ATGTCCCAAG ACTGTGTCTT GTGCTGACAT TCTCACTGCT
GCTGCACGGG ATGCCACAGT TGAGGTAGGT GGACCTTATT GGGCCGTCCC TTATGGTAGG AAAGATGGTA AGGTCTCCAT
TGCTGAGGAA GCAGCTTTGG TGCCTATGGG CCATGAAAAC ATCACTTCCA TGATTGAGTT TTTCCAGTCC AGAGGCATGT
CTGTGCTTGA CTTGGTCGTT CTCTCAGGGG CTCATACTAT TGGAAGAACT TCATGTGGGT CCATTCAACA TAGGCTATAC
AATTACCAAG GAACAGGAAA ACCAGACCCA ACAATAGATG GTAAGTATCT GAATTTCTTG CAAAGGAAGT GCAGATGGGC
CTCAGAGTAT GTGGATCTTG ATGCTACAAC ACCAAAGATC TTTGACAATG TTTACTACAT AAATCTGAAG AAGAAAATGG
GGTTGTTATC TACTGATCAG TTGCTGTACT CAGATCCAAG GACTGCACCT CTTGTTTCAG CATTGACTGC TACACATTCT
GTCTTTGAAC ACCAATTCGC AGTGTCCATG GGAAAGCTTG GCATTGTTGA TGTTCTCACT GACCAAGATG AAGGAGAAAT
CAGGACCAAT TGCAATTTTG TTAATGCTTA TTGATTTAAT CTATAATTGC TTCCCATGAT TTTTTATTTT TTTTTTGTAC
TTGGGATTTG TTTATTCCCA CTTTCTTCTT TTCTGCATGC CAATGCTTTC AAATT

[show][hide][copy]CDS

>Vigan.02G322600.01
ATGTGTAACT CTTCGCTCCC ATTGTTTCTT CTTTTGGTTC TCTGCATCGT TTTAGCCTCA GCTGATCCTT ATTACGGAAA
CTCTGACTAT AAACCTTCAT CATCTTCATA CACAACCACA ACAAGTGACA CTGTCTTCTC TCTTAAAGTA CCAACGTTAG
ATGAAACCAC ATTCGATAAT CTTCTATCCT TTGGTTACTA CCGTAAAAGC TGCCCCCAGT TTGAGTCCAT TCTACACAAC
AAAGTGAAAG AATGGATCAA GAAGGACTAC AGTTTAGGAG CTAGTCTCAT GAGGCTCCAC TTCCATGATT GCTCTGTCAG
GGGATGTGAC GGGTCTATTC TGTTGAAGCA TGATGGAAGT GAGAGGACAG CAGAAGCTAG CAAGACACTG AGAGGGTTTG
AAGTGGTGGA TGATATCAAG ACAGAATTAG AGAAACAATG TCCCAAGACT GTGTCTTGTG CTGACATTCT CACTGCTGCT
GCACGGGATG CCACAGTTGA GGTAGGTGGA CCTTATTGGG CCGTCCCTTA TGGTAGGAAA GATGGTAAGG TCTCCATTGC
TGAGGAAGCA GCTTTGGTGC CTATGGGCCA TGAAAACATC ACTTCCATGA TTGAGTTTTT CCAGTCCAGA GGCATGTCTG
TGCTTGACTT GGTCGTTCTC TCAGGGGCTC ATACTATTGG AAGAACTTCA TGTGGGTCCA TTCAACATAG GCTATACAAT
TACCAAGGAA CAGGAAAACC AGACCCAACA ATAGATGGTA AGTATCTGAA TTTCTTGCAA AGGAAGTGCA GATGGGCCTC
AGAGTATGTG GATCTTGATG CTACAACACC AAAGATCTTT GACAATGTTT ACTACATAAA TCTGAAGAAG AAAATGGGGT
TGTTATCTAC TGATCAGTTG CTGTACTCAG ATCCAAGGAC TGCACCTCTT GTTTCAGCAT TGACTGCTAC ACATTCTGTC
TTTGAACACC AATTCGCAGT GTCCATGGGA AAGCTTGGCA TTGTTGATGT TCTCACTGAC CAAGATGAAG GAGAAATCAG
GACCAATTGC AATTTTGTTA ATGCTTATTG A

[show][hide][copy]PROTEIN

>Vigan.02G322600.01
MCNSSLPLFL LLVLCIVLAS ADPYYGNSDY KPSSSSYTTT TSDTVFSLKV PTLDETTFDN LLSFGYYRKS CPQFESILHN
KVKEWIKKDY SLGASLMRLH FHDCSVRGCD GSILLKHDGS ERTAEASKTL RGFEVVDDIK TELEKQCPKT VSCADILTAA
ARDATVEVGG PYWAVPYGRK DGKVSIAEEA ALVPMGHENI TSMIEFFQSR GMSVLDLVVL SGAHTIGRTS CGSIQHRLYN
YQGTGKPDPT IDGKYLNFLQ RKCRWASEYV DLDATTPKIF DNVYYINLKK KMGLLSTDQL LYSDPRTAPL VSALTATHSV
FEHQFAVSMG KLGIVDVLTD QDEGEIRTNC NFVNAY*