GBrowse Details

Vigan.02G324900.01

Basic Information:
Name: Vigan.02G324900.01
Multiple alignment
Variant Information
Position: Chr02:44177716..44181925 (+ strand)
Length: 4210
Functional Information:
Description: Similar to Expressed protein. [Q2QP64, Oryza sativa subsp. japonica]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.00,16.53,3.90,3.14,4.09,2.79,2.40,3.28
Arabidopsis thaliana homolog: AT3G21400.1
Automatic updates:
Name: NM_001250626 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527797 (LOC100527797), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:44177716..44177801 (+ strand)
Length: 86
Type: five_prime_UTR
Position: Chr02:44177802..44177973 (+ strand)
Length: 172
Type: CDS
Position: Chr02:44178968..44179092 (+ strand)
Length: 125
Type: CDS
Position: Chr02:44179730..44180020 (+ strand)
Length: 291
Type: CDS
Position: Chr02:44180021..44181925 (+ strand)
Length: 1905
Type: three_prime_UTR


>Vigan.02G324900.01
CCAAAACAAG CCACGAAAAC ATCTTCAATA TTAGGCTTAC ACTACAAGAG ACATCACAAG GCCGCGTTTG GCGTCAAAAC
ACAACGATGG GTCAGGCATT TCGTCGAGCA TCTGGAAGAA TCCGGGCAGC ATCCGAGGCT GACACCTCAT CTTTCTCCAA
GCCAAAGAAC GCCGTTGATC GCCGACCGCC GCCCACGGTT GCCACCGACA AGGCGGCGCA GATCTCGAAA GCCGCCGAAC
AAGACGTACT TCAGGCCGAT GATCGTTCTA GAGTTAATAT GGACAACGTC CTGGAAGAAA GAGATCCCAA ATTTGATGCT
ATGCTTGGTC AAATGGTTGG TAGAATTAAA TCAAAGCCTG GGGGGAAACC TGAGATGGGT GAGGCCTTTG TGGTTGAGAA
GTACAACAGG CCAATGCCCA AATTGCGAAA CACAAAACCA GATTCTGGGC GCTACGAGGA AAGGCAGGTT CCTGCTGGCA
CTTTGAATAT TGCTCAGTTG CGCCATATCA TACTTTTACA CGAAGGTAAG GCTGATGATT ACAATGGACG TATGAATGCT
CAACAGATTG CTGAAAAATT TCAAGTGGAT CTTGTTCAGA TTCAGAGGAT CTTGCAATTC TTATCACAAC CTCCAGAAGG
TAGCAGTAAA GACAAGAACG AAGCACCAAG ATAATAGCTT AACTGACATT ACTCACTGGT TCTTTCTTGT GTTAAAATGG
CTGTTCTAAA TGGATTTCAA GTGCGGACAA AAGTCTTGGG CATTAAAACA TGTCCGAAAG AAAGGACAAT GCCAAAAGGC
CATAACATGA GGTCTTCATT TAACTTGTAA TAGACTATAT TATCAGGTGC TTGTGCAGCC CCTATTCATA GACTCGAATG
ACATCGTGAT ATCAACAATT GCATTTGTAC TTCTGACGAG AATTAACCCT GGAGAGGGTG AGTTGCAATA AGTGTTTTGA
AACCCTACAG CTGAGATATT GTTTGTTGTT TTTGCATTAC TTCACGACAG TTAATAAAAC TGAGCAATTT CAGTTTTGTT
CTTGCAAGAT GCATATATTT GTAAACTCTG ATATTTAGAT GTACTTGCAC TGTTAGACTT ATTCCATGCA GAGAGATTCG
TGTCCCTGCG TCATTAGCCT CGAATTTAAT CACCTCGATC CTAGTCCCTG AGCATAGTTA ATTTGGATTG GTTGCAAAAC
CAGTGCATAT AAAACCCTCA AATTGTGGAA GATGAAGTCC GAATGAAGAC GGATTTAGCT GTTGGTGGGA TTATTCTTGT
TAAGGTGATT TTTACTTCCA AATTTATCCT AAATGGTTCA AATGAAGCGC ACCATTTAGA AAAAGGACAA TTGATGTCAC
TCTGCTAAAT CTTAGCTTTT ACTTTGCTGA ATATTCATCT TAAAAGTGAA CTAGAATCGT ATCCACTATC TCAAAATTGG
CATACACCTC TTCCTATCCA GGCGATGACT AAATGGATTA AAAAGAATGA GATAATGAAG ATTAAAAAAA AAATCCCCTT
TTCCCCCTTA GTAAAAAAAT CAAGTCAAAA GAGATTCCAG CCAGTCTGAT GTCAATTCAT ACGCCACAAA TGTTACAGCA
TTAGCTGGTG CAGCTTTAAC AGTTGATGGG ACTATCCCCT TATATAGACC AGCCCAACCC TCCATTTGTA ATATTCGCTT
TATGGCATCA AGCATATTGC TGTATGCACG GTGTTCAACC CGAGCTCCAT ATCTTGGATG CCTTTGTAGA CCTTCAATCT
GCAGCAAAAA CAATGAAGAT TCATAATTTG CTTATTTTTT ATGGAGGAAT GAGGGGTTCA AAATTCTATC ATCCACCTGA
AATCTTTTCT TGACCACATC AAGTGGATGA GTGGCGAGCT TGGCACATGT TCCTGCACTC ACTCCACAGA GGAAAAGCTG
AAAGCTAGAG ATGTTTTCTG CAGTAGAATT CGAATATTGA CGTTGATTCC ACGCCTACAT TTTTCCCGCA TAATACATAC
ATATTAAAAA ACAGGTATCA AAGAATTGCT CACTACAAAG TATGAGTAAA GCATATATCA GTTCTGTGAA GGAATCTTAA
TATGATGTTA CCTCAGTAGA CCATATTTGC ATTAAAATAA GTTCAAGTAT TAGTATACTG ACATTTGACA CAGTGAGTTA
TGATGATATT TATTGAAAAG AGAAAAACTC TCCTTCTGTC ACTGGCCACT AGCAGTTATA GATATGGAGA GCTGAGACTG
GGTATGAGGC ATAAACAACA TTTTGCTCGG ACCAAAATTC AAAATTAACA TTAACTGCTG CATAGCTTCC TTGTCATTAC
AAATAGCCAG TGGGAAAATA ATAACCAAAC AAACATTCAA TACGTGCATG CCATAATTAC GTCAAATACA AATAAGTGGA
ATGGTAAATA GAAGAACTGA AATTTTACCA TGGTCCAACG TTTAAATGTA TCATAGGTGC CAAATTGTAG AGCTGCATAT
GGTATAATCT CAACTAGGGT TGGTGACAAT CCAGCATACA AGCCTTGGAA GCCACGAGTC TGCACAATAT CAACAAATGC
CGTTCTCATG TTTGGATAA

>Vigan.02G324900.01
ATGGGTCAGG CATTTCGTCG AGCATCTGGA AGAATCCGGG CAGCATCCGA GGCTGACACC TCATCTTTCT CCAAGCCAAA
GAACGCCGTT GATCGCCGAC CGCCGCCCAC GGTTGCCACC GACAAGGCGG CGCAGATCTC GAAAGCCGCC GAACAAGACG
TACTTCAGGC CGATGATCGT TCTAGAGTTA ATATGGACAA CGTCCTGGAA GAAAGAGATC CCAAATTTGA TGCTATGCTT
GGTCAAATGG TTGGTAGAAT TAAATCAAAG CCTGGGGGGA AACCTGAGAT GGGTGAGGCC TTTGTGGTTG AGAAGTACAA
CAGGCCAATG CCCAAATTGC GAAACACAAA ACCAGATTCT GGGCGCTACG AGGAAAGGCA GGTTCCTGCT GGCACTTTGA
ATATTGCTCA GTTGCGCCAT ATCATACTTT TACACGAAGG TAAGGCTGAT GATTACAATG GACGTATGAA TGCTCAACAG
ATTGCTGAAA AATTTCAAGT GGATCTTGTT CAGATTCAGA GGATCTTGCA ATTCTTATCA CAACCTCCAG AAGGTAGCAG
TAAAGACAAG AACGAAGCAC CAAGATAA

>Vigan.02G324900.01
MGQAFRRASG RIRAASEADT SSFSKPKNAV DRRPPPTVAT DKAAQISKAA EQDVLQADDR SRVNMDNVLE ERDPKFDAML
GQMVGRIKSK PGGKPEMGEA FVVEKYNRPM PKLRNTKPDS GRYEERQVPA GTLNIAQLRH IILLHEGKAD DYNGRMNAQQ
IAEKFQVDLV QIQRILQFLS QPPEGSSKDK NEAPR*