GBrowse Details

Vigan.02G328000.01

Basic Information:
Name: Vigan.02G328000.01
Multiple alignment
Variant Information
Position: Chr02:44428039..44432500 (+ strand)
Length: 4462
Functional Information:
Description: Similar to Uncharacterized protein. [I1MGN0, Glycine max]
GO: Biological Process: microtubule-based process (GO:0007017)
Cellular Component: microtubule associated complex (GO:0005875)
InterPro: Dynein light chain, type 1/2 (IPR001372)
Dynein light chain, type 1/2, conserved site (IPR019763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.79,5.79,12.54,22.08,11.02,21.98,6.81,17.84
Arabidopsis thaliana homolog: AT4G15930.1
Automatic updates:
Name: NM_001251366 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527842 (LOC100527842), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251641 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305908 (LOC100305908), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:44428039..44428462 (+ strand)
Length: 424
Type: five_prime_UTR
Position: Chr02:44428463..44428630 (+ strand)
Length: 168
Type: CDS
Position: Chr02:44428760..44428865 (+ strand)
Length: 106
Type: CDS
Position: Chr02:44432272..44432354 (+ strand)
Length: 83
Type: CDS
Position: Chr02:44432355..44432500 (+ strand)
Length: 146
Type: three_prime_UTR


>Vigan.02G328000.01
CAGCCATTGG TCCACCTAAT TTCTGTCGTG CAAGGATTCG CACCAGTAGA CCACACCAAA TATGCTCCAC AATCCTTTTA
CATATTCTTC AAAACACCAC TTTATTTTCG TCAAAATAAA ATTCTTAAAT TCAAAAGACA CCAATTTTAT TTATTTGTTT
ATTTATTCCA TAATAGAAAC AACATATTCT CCAAAACAGT GCTTATGGTG GGCCTTTTGC TGAACTCGGA AGCATTCTCT
GGTGTGTGTG GTGTGGTGTT GCTGTTTCTA CACTTACCAC TGCAACTCTC TTCTTTCTTC TGCATTTCTC AGCTTAGCCC
CCCCACGTCG CTTTCACTTC CCGGAAACCC AACTTCATCA TCAAAATTTC ATATCACACA CAATAGATAG ATAGAGTGAG
AGAGAGAAAT TGCAAAAAAA GAAAATGAGT GAAGAAGTAA AAAAGAACTT CGCCGGACCT CCAACGGCGA GGCTCAACGC
CGATGACCGG AAACCGTTAC CGGCACCGGC CGTTCCCCCG AAGAAGGTCA TCATCAAGAG CGCCGACATG ATCCCCGACA
TGCAGAAGGA GGCCGTTGAT ATCGCCGTCG CCGCCTTTGA GAAGTACAAT GTGGAGAAAG ATGTTGCGGA GCAGATAAAG
AAGGAGTTCG ATAAGAGGCA TGGCCCCACT TGGCATTGCA TCGTTGGTCG TAATTTTGGC TCATATGTGA CTCATGAAAC
AAACCACTTT GTTTATTTCT ATTTGGATCA GAAAGCGGTT TTACTCTTCA AATCTGGCTA GCTTTATTGT GGTAGCAAAG
ATGTTGAGAA ATGGGAATTA TATTGTGATT GTACTGCTGC ATGCAGTCCT CCTTGTATTA AGTCCACTGA CATGCAAAAT
CTTTGTTGAA CATTCTTGTT CTTGTATTTT TGATGTCATG TAAACCA

>Vigan.02G328000.01
ATGAGTGAAG AAGTAAAAAA GAACTTCGCC GGACCTCCAA CGGCGAGGCT CAACGCCGAT GACCGGAAAC CGTTACCGGC
ACCGGCCGTT CCCCCGAAGA AGGTCATCAT CAAGAGCGCC GACATGATCC CCGACATGCA GAAGGAGGCC GTTGATATCG
CCGTCGCCGC CTTTGAGAAG TACAATGTGG AGAAAGATGT TGCGGAGCAG ATAAAGAAGG AGTTCGATAA GAGGCATGGC
CCCACTTGGC ATTGCATCGT TGGTCGTAAT TTTGGCTCAT ATGTGACTCA TGAAACAAAC CACTTTGTTT ATTTCTATTT
GGATCAGAAA GCGGTTTTAC TCTTCAAATC TGGCTAG

>Vigan.02G328000.01
MSEEVKKNFA GPPTARLNAD DRKPLPAPAV PPKKVIIKSA DMIPDMQKEA VDIAVAAFEK YNVEKDVAEQ IKKEFDKRHG
PTWHCIVGRN FGSYVTHETN HFVYFYLDQK AVLLFKSG*