GBrowse Details

Vigan.02G333300.01

Basic Information:
Name: Vigan.02G333300.01
Multiple alignment
Variant Information
Position: Chr02:44844652..44847262 (- strand)
Length: 2611
Functional Information:
Description: Similar to Uncharacterized protein. [G7IMU5, Medicago truncatula]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.32,24.66,63.20,29.64,68.63,149.27,30.61,43.57
Automatic updates:
Name: BT089140 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-1O11 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251814 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GTP-binding protein SAR1A-like (LOC100306687), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001369242 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GTP-binding protein SAR1A-like (LOC100499682), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:44844652..44845051 (- strand)
Length: 400
Type: three_prime_UTR
Position: Chr02:44845052..44845372 (- strand)
Length: 321
Type: CDS
Position: Chr02:44846718..44846849 (- strand)
Length: 132
Type: CDS
Position: Chr02:44846944..44847072 (- strand)
Length: 129
Type: CDS
Position: Chr02:44847073..44847262 (- strand)
Length: 190
Type: five_prime_UTR


>Vigan.02G333300.01
AAGAAAAAAA AAAAACAGAG CTGCATCAGT GTATTGCATT GCATTCCCAC CACATGGGCA GACACGTGAT CTAGGATCTC
TCTTTCTCTC TCTCTGGGAT CTGCTTCCGT CTCTTTTCAA TTCTCATTCT TCATTTTCGT TCCTCCGATC TGCGACTGTT
CTCTCTTACC CCAACACAAC ACCACACATC ATGTTTCTCT TCGACTGGTT CTATGGCATT CTGGCTTCCC TTGGTCTATG
GCAGAAAGAA GCCAAGATTC TCTTCCTCGG TCTCGATAAT GCCGGCAAGA CCACTCTTCT TCACATGCTC AAAGACGAGA
GATTAGTTCA GCATCAGCCG ACCCAGCACC CCACTTCGGA GGAATTGAGC ATTGGGAAGA TCAAGTTTAA GGCTTTCGAT
TTGGGGGGTC ATCAAGTTGC TCGCAGGGTC TGGAAAGACT ATTATGCCAA GGTGGATGCT GTTGTATACC TGGTCGACGC
CTATGACAAA GAGAGGTTTG CAGAATCTAA GAAGGAGCTT GATGCTTTGC TTTCAGATGA AGGCTTGGCA GGTGTTCCTT
TTCTTGTGCT TGGCAACAAG ATTGACATCC CTTATGCAGC ATCAGAAGAC GAGCTCCGGT ATCATCTAGG CCTGACCAAT
TTCACCACTG GCAAAGGAAA GATCAACCTC ACAGACTCCA ACCTTCGACC CCTCGAAGTG TTCATGTGCA GCATTGTGCG
CAAGATGGGG TATGGTGAAG GCTTCCAGTG GCTTTCCCAG TACATCAAGT AGAGTCTTTG TTCATCTGTA GTTCCCCTTT
CTCTTGTCAA CCAGCACTGT CTGCAGTTAC ATCAGAAGAT CTTTTGACTT TGCTTTTGCT TTTGATGATT TTTGATTGGA
TTATTTGATA CAACTGCAGT GATATTACAT GATAAAATTT GTATCTTGAA AGAATTTTTT GGGAAATGTT CTCCTTTACA
TATGACTCGA TTCTGTTGTA GGATGGTATG ACTTGGCAGG AACTATTAAT AAATCTGGAA GAATCTTAGT CCATTTCCTT
CCTTGTTACA TATGAATGGT GGCTGAGTTT TCTCTTATTT GTACCTTACC TGGTTATGAT TTTGCAAATG AGAATAGAGA
GGAATGTGCT ATTGAAATAA AATTATTATA ACACACTGTC ATTGTATTGT GA

>Vigan.02G333300.01
ATGTTTCTCT TCGACTGGTT CTATGGCATT CTGGCTTCCC TTGGTCTATG GCAGAAAGAA GCCAAGATTC TCTTCCTCGG
TCTCGATAAT GCCGGCAAGA CCACTCTTCT TCACATGCTC AAAGACGAGA GATTAGTTCA GCATCAGCCG ACCCAGCACC
CCACTTCGGA GGAATTGAGC ATTGGGAAGA TCAAGTTTAA GGCTTTCGAT TTGGGGGGTC ATCAAGTTGC TCGCAGGGTC
TGGAAAGACT ATTATGCCAA GGTGGATGCT GTTGTATACC TGGTCGACGC CTATGACAAA GAGAGGTTTG CAGAATCTAA
GAAGGAGCTT GATGCTTTGC TTTCAGATGA AGGCTTGGCA GGTGTTCCTT TTCTTGTGCT TGGCAACAAG ATTGACATCC
CTTATGCAGC ATCAGAAGAC GAGCTCCGGT ATCATCTAGG CCTGACCAAT TTCACCACTG GCAAAGGAAA GATCAACCTC
ACAGACTCCA ACCTTCGACC CCTCGAAGTG TTCATGTGCA GCATTGTGCG CAAGATGGGG TATGGTGAAG GCTTCCAGTG
GCTTTCCCAG TACATCAAGT AG

>Vigan.02G333300.01
MFLFDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQVARRV
WKDYYAKVDA VVYLVDAYDK ERFAESKKEL DALLSDEGLA GVPFLVLGNK IDIPYAASED ELRYHLGLTN FTTGKGKINL
TDSNLRPLEV FMCSIVRKMG YGEGFQWLSQ YIK*