GBrowse Details

Vigan.02G334700.01

Basic Information:
Name: Vigan.02G334700.01
Multiple alignment
Variant Information
Position: Chr02:44936848..44939357 (+ strand)
Length: 2510
Functional Information:
Description: Similar to DNA-directed RNA polymerase subunit. [V7B3G1, Phaseolus vulgaris]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: DNA-directed RNA polymerase activity (GO:0003899)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, TFIIS-type (IPR001222)
DNA-directed RNA polymerase, M/15kDa subunit (IPR001529)
DNA-directed RNA polymerase, subunit C11/M/9 (IPR012164)
DNA-directed RNA polymerase M, 15kDa subunit, conserved site (IPR019761)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:6.00,8.28,5.95,4.75,11.08,6.88,10.36,5.72
Arabidopsis thaliana homolog: AT3G16980.1
Automatic updates:
Name: NM_001248874 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305979 (LOC100305979), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr02:44936848..44936961 (+ strand)
Length: 114
Type: five_prime_UTR
Position: Chr02:44936962..44936990 (+ strand)
Length: 29
Type: CDS
Position: Chr02:44937068..44937143 (+ strand)
Length: 76
Type: CDS
Position: Chr02:44937464..44937622 (+ strand)
Length: 159
Type: CDS
Position: Chr02:44938862..44938942 (+ strand)
Length: 81
Type: CDS
Position: Chr02:44938943..44939357 (+ strand)
Length: 415
Type: three_prime_UTR


>Vigan.02G334700.01
TTTGGATGCT ACATAACAGA GACAGAGGCG TGAGAGGGAA ATTAGAAAGA GCAAAGAAAA GGAGCGAAGA AGAGCATCGA
GTAGGATTCT TCATCCCTTC ACATCGTTGC CAAGATGAGT ACTATGAAAT TTTGCCGTGA ATGTAACAAC ATTCTCTACC
CTAAAGAAGA CAGAGATCAG AAGATTCTTC TCTACGCTTG CCGCAACTGC GACCATCAGG AGGTTGCGGA TAACTTCTGT
GTATACAGGA ATGAGATACA TCATTCTGTT GGAGAGCGCA CTCAAGTGTT GCAGGATGTA GCTGCAGATC CAACGCTTCC
TCGGACCAAG TCTGTTCGCT GCACTCAGTG CAATCATGGT GAAGCTGTCT TTTTCCAGGC AACAGCAAGA GGGGAAGAAG
GAATGACACT TTTTTTCGTT TGCTGCAATC CAAACTGTGG ATACCGATGG AGAGACTGAA ATTTGAGCTT CTTCAGATGA
AGGTTCAATA CTGGGGAAAT CCAATATTTG TTTTAGCCTA TTTTGAAAAG TTAATCTTTT TATTTTTCTT GTCAAGTTTC
TGAAAAGCTT TTGGAAAACA GAAACTACTT CTCAAATTTT AAGCTAAAGC AAAAAGGGCT ATGTTGTCTA TAGTATGACA
GAGGAGAGAA TGCATTTCTG AAAAGCTTTT TATTTTTGTT TTAACTGCAG TTTCTGATCT AATGATTAAA ATAGTTAATG
TAAAACTGTT GTTGGTCAGT GCTGATAACT TGTATGGATA GGCCTAAAAC AAAGTGTCAT GCTATTTTAA ATTTTATTCA
ACATTTTCTA AATCTAAAAT GAAGTGTCAC TTCCTCGTAC CAGAATTTTG TATGAAAAAT ACTTCACATA TATT

>Vigan.02G334700.01
ATGAGTACTA TGAAATTTTG CCGTGAATGT AACAACATTC TCTACCCTAA AGAAGACAGA GATCAGAAGA TTCTTCTCTA
CGCTTGCCGC AACTGCGACC ATCAGGAGGT TGCGGATAAC TTCTGTGTAT ACAGGAATGA GATACATCAT TCTGTTGGAG
AGCGCACTCA AGTGTTGCAG GATGTAGCTG CAGATCCAAC GCTTCCTCGG ACCAAGTCTG TTCGCTGCAC TCAGTGCAAT
CATGGTGAAG CTGTCTTTTT CCAGGCAACA GCAAGAGGGG AAGAAGGAAT GACACTTTTT TTCGTTTGCT GCAATCCAAA
CTGTGGATAC CGATGGAGAG ACTGA

>Vigan.02G334700.01
MSTMKFCREC NNILYPKEDR DQKILLYACR NCDHQEVADN FCVYRNEIHH SVGERTQVLQ DVAADPTLPR TKSVRCTQCN
HGEAVFFQAT ARGEEGMTLF FVCCNPNCGY RWRD*