GBrowse Details

Vigan.03G008400.01

Basic Information:
Name: Vigan.03G008400.01
Multiple alignment
Variant Information
Position: Chr03:624006..626685 (- strand)
Length: 2680
Functional Information:
Description: Similar to Uncharacterized protein. [I1M672, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: integral to membrane (GO:0016021)
InterPro: GOLD (IPR009038)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:39.97,26.74,95.81,51.06,121.74,228.14,131.91,68.80
Arabidopsis thaliana homolog: AT3G07680.1
Automatic updates:
Name: NM_001248863 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max emp24/gp25L/p24 domain-containing protein (LOC100527418), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:624006..624170 (- strand)
Length: 165
Type: three_prime_UTR
Position: Chr03:624171..624304 (- strand)
Length: 134
Type: CDS
Position: Chr03:624873..624980 (- strand)
Length: 108
Type: CDS
Position: Chr03:625105..625291 (- strand)
Length: 187
Type: CDS
Position: Chr03:626411..626623 (- strand)
Length: 213
Type: CDS
Position: Chr03:626624..626685 (- strand)
Length: 62
Type: five_prime_UTR


>Vigan.03G008400.01
GTTTTGATTC TGTGGATCCG TGATTTTGAG ATGAGTATCT GAATTAACCT ATTGTTTGGC AGATGAGATT ACCATCGTTG
AGGCATGCTT TGGTGTTCGT GTTAATTGGG GCATTGTGGA ACTTGCAGAG GTCGGAGGGT ATTCGATTTG TGATAGACAG
GGACGAGTGT TTCTCCCATG ATGTCAAGTA CGAGGGTGAC ACTGTTCATG TCTCTTTCGT TGTTATCAAG GCTGATTCTC
CCTGGCATTA TGGCGACGAA GGTGTCGATC TCGTGGTAAA GGGTCCCTCT GGTGAGCAAA TTCAAGATTT TCGGGACAAG
ACCAGTGACA AGTTTGACTT CGTGGCTCAC AAATCAGGGG TTCATAAGTT CTGCTTCACC AACAAGTCTC CTTATCATGA
AACTGTCGAT TTTGATGTAC ATGTTGGACA CTTCTCTTAC TTTGAGCAGC ATGCAAAAGA TGAGCATTTT ACCCCCTTGC
TGGAGCAAAT AGGAAAGTTG GAGGAAGCTC TATACAACAT TCAGTTTGAA CAGCATTGGT TAGAGGCTCA GACTGATCGC
CAAGCAATAG TGAACGATGC AATGAGCCGA AGAGCAGTAC ACAAGGCAAT TTTTGAATCA GCCGCACTGA TTGGGGCTAG
TGCGATTCAA GTCTACCTTC TACAGCGATT GTTTGAACGA AAACTGGGTA CCTCAAGAGT TTAGAGCTTC CAAATGTATT
CAGAAACTGT AACAGTACAG ACGAGAATGA TATTTTGAAC TTTTTTTCTT CTGTTTTCAT CACTTGGATA TTTATATAAC
TAGTTCTACT TATAATACCT GTGGAAAGAT GTTATTTAAT GTTAATTATA GTTCATTTCA TTTGCCATA

>Vigan.03G008400.01
ATGAGATTAC CATCGTTGAG GCATGCTTTG GTGTTCGTGT TAATTGGGGC ATTGTGGAAC TTGCAGAGGT CGGAGGGTAT
TCGATTTGTG ATAGACAGGG ACGAGTGTTT CTCCCATGAT GTCAAGTACG AGGGTGACAC TGTTCATGTC TCTTTCGTTG
TTATCAAGGC TGATTCTCCC TGGCATTATG GCGACGAAGG TGTCGATCTC GTGGTAAAGG GTCCCTCTGG TGAGCAAATT
CAAGATTTTC GGGACAAGAC CAGTGACAAG TTTGACTTCG TGGCTCACAA ATCAGGGGTT CATAAGTTCT GCTTCACCAA
CAAGTCTCCT TATCATGAAA CTGTCGATTT TGATGTACAT GTTGGACACT TCTCTTACTT TGAGCAGCAT GCAAAAGATG
AGCATTTTAC CCCCTTGCTG GAGCAAATAG GAAAGTTGGA GGAAGCTCTA TACAACATTC AGTTTGAACA GCATTGGTTA
GAGGCTCAGA CTGATCGCCA AGCAATAGTG AACGATGCAA TGAGCCGAAG AGCAGTACAC AAGGCAATTT TTGAATCAGC
CGCACTGATT GGGGCTAGTG CGATTCAAGT CTACCTTCTA CAGCGATTGT TTGAACGAAA ACTGGGTACC TCAAGAGTTT
AG

>Vigan.03G008400.01
MRLPSLRHAL VFVLIGALWN LQRSEGIRFV IDRDECFSHD VKYEGDTVHV SFVVIKADSP WHYGDEGVDL VVKGPSGEQI
QDFRDKTSDK FDFVAHKSGV HKFCFTNKSP YHETVDFDVH VGHFSYFEQH AKDEHFTPLL EQIGKLEEAL YNIQFEQHWL
EAQTDRQAIV NDAMSRRAVH KAIFESAALI GASAIQVYLL QRLFERKLGT SRV*