VIGGS:GBrowse

Vigan.03G010100.01

Basic Information:

Name:	Vigan.03G010100.01 Multiple alignment Variant Information
Position:	Chr03:721169..723201 (+ strand)
Length:	2033

Functional Information:

Description:	Similar to Auxin-induced in root cultures protein. [G7K4W5, Medicago truncatula]
GO:	Cellular Component: integral to membrane (GO:0016021)
InterPro:	Cytochrome b561, eukaryote (IPR004877)
	DOMON domain (IPR005018)
	Cytochrome b561/ferric reductase transmembrane (IPR006593)
	Uncharacterised conserved protein UCP037471 (IPR017214)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.07,0.09,2.60,1.68,0.35,2.50,4.95,13.45
Arabidopsis thaliana homolog:	AT2G04850.1

Automatic updates:

Name:	NM_001317407 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max cytochrome b561 and DOMON domain-containing protein At2g04850-like (LOC100775680), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001317554 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max cytochrome b561 and DOMON domain-containing protein At2g04850-like (LOC100799859), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:721169..721488 (+ strand)
Length:	320
Type:	five_prime_UTR

Position:	Chr03:721489..722236 (+ strand)
Length:	748
Type:	CDS

Position:	Chr03:722646..723100 (+ strand)
Length:	455
Type:	CDS

Position:	Chr03:723101..723201 (+ strand)
Length:	101
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G010100.01
CTCGTGAACA ACTACAATCA AAAGGAGTAG CCGCACTAGA TCGACATCAT AATATTACAA AATTTTAAAC CAATCACAGT
GTCCCATTTC CACCAAACGC ATATGCACAA CATTGTCTTC CCTTCAAAGT CAAGCACCAA CAACATAAAA GAAAGTAAGC
ACTAACGTTT TCACTTATTA CGTGTTCAAA ATCCATAATA GCAACCTTAA CACAGCATTA CAAAACACAG CATTGTTAAC
AAAAGAACTG AACCATGAAC CATTAATTCT CTCCCTATCC ATCACTTACT CTCTCCAATT CTCCCTCCAT CAACGCCACC
ATGCTTTTTC TTTTCCTCTT CCTTCTATGT TCCCTTCCCC ACATCGCATT CTCATCCCAC TGCACGGTCG AAACAGCGAC
CAAAACGTTC CAAAAATGCA TGAACCTCCC AACCCAACAA GCCTCCATAG CATGGACATT CCACCCTCAC AACACAACCT
TGGAACTTGT CTTCTTTGGA AGCTTCATTT CACCTTCTGG GTGGGTTGGA TGGGGCATAA ACCCCACATC GCCGGAAATG
ACAGGAACAC GTGCATTAAT AGCCTTCCCT GACCCAAACT CGGGCCAAAT AGTTCTTCTA CCTTACATCT TAGACCCCAC
AGTCAAGCTT CAAAAATCTC CACTTCTCTC TCGCCCTCTT GACATCCACC TCCTCTCCTC CACCGCCTCC ATGTACGGCG
GAAAACTGGC CACCGTGCAC AACGGCGCCA CCATCCAAAT CTACGGCACC ATGAAACTGC AAACGAACAA AACGAAGATC
CACCTTGTTT GGAACAGGGG ACTTTACGTG CAGGGCTACT CCCCCACCAT TCATCCAACC ACCTCCACCG ACCTGTCTTC
CATTGCCACC TTTGACGTGT TGTCGGGATC CTCTGCTCCT CAGCACACGG ATCTCACTAT GCTGAGAGTG ATCCATGGCA
CCCTCAACGC CATCTCCTGG GGCCTTCTCT TACCCATCGG AGCCATCACC GCACGCTACC TTCGCCACAT TCAAGCACTC
GGACCCGCAT GGTTCTATGC TCATGCAGGA GTTCAACTGT TTGGTTTCGT TCTGGGGACG GTGGGGTTTG GCATCGGAAT
TCGGCTGGGG CAACTGTCGC CGGGAGTGGA GTACAGGCTT CACCGGAAGC TTGGAATCGG AGTGTTCTGC TTAGGGGCGT
TGCAGACTCT GGCACTGTTG TTTAGGCCAA ACACAAGGAA CAAGTTCAGA AAGTACTGGA AATCGTACCA CCACTTTGTA
GGGTACTCGT GTGTGGTGCT TGGGTTTGTG AATGTCTTTC AAGGATTTGA GGTGATGGGT GCAAGCAGGT CCTACGCCAA
GTTGACCTAT TGCCTAGGAC TCTCTACTCT CATTGGCCTT TGCATTGCTT TGGAGGTCAA TTCTTGGGTC GTTTTCTGCA
GAAAATCCAA GGAAGATAAG ATGAGGAGAG AAGGGTTCAT TGCAACTTCT CACAAAGGAA CTTCATCTGC CATTCACAAT
TAACGTTACT ATTTCATTTC AACTTTTTAC TCAATTTTTT CTATCCAAAT CCAATGATTT TGATTCATAC ATACGTACAC
ACCATTGCCA TTTTCTGTTT GATT

[show][hide][copy]CDS

>Vigan.03G010100.01
ATGCTTTTTC TTTTCCTCTT CCTTCTATGT TCCCTTCCCC ACATCGCATT CTCATCCCAC TGCACGGTCG AAACAGCGAC
CAAAACGTTC CAAAAATGCA TGAACCTCCC AACCCAACAA GCCTCCATAG CATGGACATT CCACCCTCAC AACACAACCT
TGGAACTTGT CTTCTTTGGA AGCTTCATTT CACCTTCTGG GTGGGTTGGA TGGGGCATAA ACCCCACATC GCCGGAAATG
ACAGGAACAC GTGCATTAAT AGCCTTCCCT GACCCAAACT CGGGCCAAAT AGTTCTTCTA CCTTACATCT TAGACCCCAC
AGTCAAGCTT CAAAAATCTC CACTTCTCTC TCGCCCTCTT GACATCCACC TCCTCTCCTC CACCGCCTCC ATGTACGGCG
GAAAACTGGC CACCGTGCAC AACGGCGCCA CCATCCAAAT CTACGGCACC ATGAAACTGC AAACGAACAA AACGAAGATC
CACCTTGTTT GGAACAGGGG ACTTTACGTG CAGGGCTACT CCCCCACCAT TCATCCAACC ACCTCCACCG ACCTGTCTTC
CATTGCCACC TTTGACGTGT TGTCGGGATC CTCTGCTCCT CAGCACACGG ATCTCACTAT GCTGAGAGTG ATCCATGGCA
CCCTCAACGC CATCTCCTGG GGCCTTCTCT TACCCATCGG AGCCATCACC GCACGCTACC TTCGCCACAT TCAAGCACTC
GGACCCGCAT GGTTCTATGC TCATGCAGGA GTTCAACTGT TTGGTTTCGT TCTGGGGACG GTGGGGTTTG GCATCGGAAT
TCGGCTGGGG CAACTGTCGC CGGGAGTGGA GTACAGGCTT CACCGGAAGC TTGGAATCGG AGTGTTCTGC TTAGGGGCGT
TGCAGACTCT GGCACTGTTG TTTAGGCCAA ACACAAGGAA CAAGTTCAGA AAGTACTGGA AATCGTACCA CCACTTTGTA
GGGTACTCGT GTGTGGTGCT TGGGTTTGTG AATGTCTTTC AAGGATTTGA GGTGATGGGT GCAAGCAGGT CCTACGCCAA
GTTGACCTAT TGCCTAGGAC TCTCTACTCT CATTGGCCTT TGCATTGCTT TGGAGGTCAA TTCTTGGGTC GTTTTCTGCA
GAAAATCCAA GGAAGATAAG ATGAGGAGAG AAGGGTTCAT TGCAACTTCT CACAAAGGAA CTTCATCTGC CATTCACAAT
TAA

[show][hide][copy]PROTEIN

>Vigan.03G010100.01
MLFLFLFLLC SLPHIAFSSH CTVETATKTF QKCMNLPTQQ ASIAWTFHPH NTTLELVFFG SFISPSGWVG WGINPTSPEM
TGTRALIAFP DPNSGQIVLL PYILDPTVKL QKSPLLSRPL DIHLLSSTAS MYGGKLATVH NGATIQIYGT MKLQTNKTKI
HLVWNRGLYV QGYSPTIHPT TSTDLSSIAT FDVLSGSSAP QHTDLTMLRV IHGTLNAISW GLLLPIGAIT ARYLRHIQAL
GPAWFYAHAG VQLFGFVLGT VGFGIGIRLG QLSPGVEYRL HRKLGIGVFC LGALQTLALL FRPNTRNKFR KYWKSYHHFV
GYSCVVLGFV NVFQGFEVMG ASRSYAKLTY CLGLSTLIGL CIALEVNSWV VFCRKSKEDK MRREGFIATS HKGTSSAIHN
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