GBrowse Details

Vigan.03G011400.01

Basic Information:
Name: Vigan.03G011400.01
Multiple alignment
Variant Information
Position: Chr03:822203..824037 (- strand)
Length: 1835
Functional Information:
Description: Similar to LHCII type II chlorophyll a/b-binding protein. [Q9LKI1, Vigna radiata var. radiata]
GO: Biological Process: photosynthesis, light harvesting (GO:0009765)
Cellular Component: membrane (GO:0016020)
InterPro: Chlorophyll A-B binding protein, plant (IPR001344)
Chlorophyll A-B binding protein (IPR022796)
Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:24.64,10.82,386.15,2800.68,1.69,1775.39,8.07,501.48
Arabidopsis thaliana homolog: AT2G05100.1
Automatic updates:
Name: NM_001253254 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chlorophyll a-b binding protein 151, chloroplastic-like (LOC100793702), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:822203..822497 (- strand)
Length: 295
Type: three_prime_UTR
Position: Chr03:822498..823149 (- strand)
Length: 652
Type: CDS
Position: Chr03:823539..823684 (- strand)
Length: 146
Type: CDS
Position: Chr03:823685..824037 (- strand)
Length: 353
Type: five_prime_UTR


>Vigan.03G011400.01
GTAGAATGAA CCCAACCCAA ACTATCTGCA ATTTCAAGTT GATATTTTTA ATTTTGATTT CTTAGACTTT GGTGGGCCCT
TTTTCTGTGG CTTACATTAG CCCTCTCGAA AACATCTATG GAAGAAGATC TTTGCATCCA CGTGGCAGAA GCAGAGACAG
TTTAGCAGCA CAAAATATCA GCATGAGAAT CCACATCCAT ATCCAGAACC AATGAAGTGT TGCTGAGTTG TGCATATCCT
CATCCACAAT ATCATGCCAC CCTTCTATAA ACATTTGTAG TACCCTTCTT CATTCTCCAC AACACACTCA CAAAACCAAA
GAAAGAAGAG ACCTTTAACC ACACAACACA GCCATGGCCA CCACTGCTTT CCAGCAATCA GCATTCGCTG GTCAAACAGC
TCTGAAGCAG GTCAATGAGC TCGTCCGCAA GACCGGTGGC TCCGGCCAAG GTCGCACCAA CATGCGCCGC ACCGTCAAAA
GTGCTCCTCA GAGCATTTGG TATGGCCCTG ACCGTCCCAA GTACTTGGGT CCATTTTCTG ACCAGATTCC ATCATACCTG
ACCGGTGAAT TCCCTGGTGA CTACGGATGG GACACGGCTG GATTATCAGC TGACCCTGAA ACCTTTGCCA GGAACCGTGA
GTTGGAGGTG ATTCACAGCA GATGGGCCAT GCTTGGTGCT CTAGGATGCA CCTTCCCAGA GATTCTTGAG AAGAATGGTG
TGAAATTCGG TGAGGCAGTG TGGTTCAAGG CTGGTGCACA GATCTTCTCT GAGGGAGGAC TTGACTATTT GGGGAACCCA
AACCTGATCC ATGCTCAGAG CATTCTTGCC ATCTGGGCTG TGCAGGTTGT GCTTATGGGG TTTGTTGAAG GTTACAGAGT
CGGTGGAGGA CCTCTTGGTG AAGGGTTAGA CCCTATCTAC CCTGGTGGTG CTTTTGACCC TCTTGGTCTT GCTGATGACC
CTGATGCATT TGCTGAGTTG AAGGTCAAGG AACTCAAGAA TGGTCGCTTG GCTATGTTCT CCATGTTTGG TTTCTTTGTT
CAGGCCATTG TCACTGGCAA GGGCCCTATT CAGAACCTTT ACGACCATGT TGCTGACCCT GTTGCCAACA ATGCTTGGGC
TTATGCCACC AACTTCGTCC CTGGACAATG AGCATGTCAA CTTGTGCCTT CTTGGATGCA ATGCAATGCA ATCTTCTGCT
CATATTTGCA GTTTTTCCCT TGTGTTTAAC TCAAATTTCA CTGATGTAAC TACACAGCGT GTAGCAGAAG AATCTGTATG
AGAACAGTTA TATATTACAA ATTTGGATCT CTGAAATATC AAACTCTTGA CTAGTGTTTG TTAATTATAT GGTTTTCTAT
TTTCCTCATA GCCTGAACTG AACAAACTTT TCCAAAATGT TAACTGGTTC ATACATTAAA ACCATGTGTA CCAAGTACAC
CATCGC

>Vigan.03G011400.01
ATGGCCACCA CTGCTTTCCA GCAATCAGCA TTCGCTGGTC AAACAGCTCT GAAGCAGGTC AATGAGCTCG TCCGCAAGAC
CGGTGGCTCC GGCCAAGGTC GCACCAACAT GCGCCGCACC GTCAAAAGTG CTCCTCAGAG CATTTGGTAT GGCCCTGACC
GTCCCAAGTA CTTGGGTCCA TTTTCTGACC AGATTCCATC ATACCTGACC GGTGAATTCC CTGGTGACTA CGGATGGGAC
ACGGCTGGAT TATCAGCTGA CCCTGAAACC TTTGCCAGGA ACCGTGAGTT GGAGGTGATT CACAGCAGAT GGGCCATGCT
TGGTGCTCTA GGATGCACCT TCCCAGAGAT TCTTGAGAAG AATGGTGTGA AATTCGGTGA GGCAGTGTGG TTCAAGGCTG
GTGCACAGAT CTTCTCTGAG GGAGGACTTG ACTATTTGGG GAACCCAAAC CTGATCCATG CTCAGAGCAT TCTTGCCATC
TGGGCTGTGC AGGTTGTGCT TATGGGGTTT GTTGAAGGTT ACAGAGTCGG TGGAGGACCT CTTGGTGAAG GGTTAGACCC
TATCTACCCT GGTGGTGCTT TTGACCCTCT TGGTCTTGCT GATGACCCTG ATGCATTTGC TGAGTTGAAG GTCAAGGAAC
TCAAGAATGG TCGCTTGGCT ATGTTCTCCA TGTTTGGTTT CTTTGTTCAG GCCATTGTCA CTGGCAAGGG CCCTATTCAG
AACCTTTACG ACCATGTTGC TGACCCTGTT GCCAACAATG CTTGGGCTTA TGCCACCAAC TTCGTCCCTG GACAATGA

>Vigan.03G011400.01
MATTAFQQSA FAGQTALKQV NELVRKTGGS GQGRTNMRRT VKSAPQSIWY GPDRPKYLGP FSDQIPSYLT GEFPGDYGWD
TAGLSADPET FARNRELEVI HSRWAMLGAL GCTFPEILEK NGVKFGEAVW FKAGAQIFSE GGLDYLGNPN LIHAQSILAI
WAVQVVLMGF VEGYRVGGGP LGEGLDPIYP GGAFDPLGLA DDPDAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPIQ
NLYDHVADPV ANNAWAYATN FVPGQ*