VIGGS:GBrowse

Vigan.03G015400.01

Basic Information:

Name:	Vigan.03G015400.01 Multiple alignment Variant Information
Position:	Chr03:1186461..1188363 (- strand)
Length:	1903

Functional Information:

Description:	Similar to Fructose-bisphosphate aldolase. [V7B9D7, Phaseolus vulgaris]
GO:	Biological Process: glycolysis (GO:0006096)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332)
InterPro:	Fructose-bisphosphate aldolase, class-I (IPR000741)
InterPro:	Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:91.61,35.47,2.40,322.46,0.28,13.73,0.23,13.53
Arabidopsis thaliana homolog:	AT2G36460.1, AT3G52930.1, AT4G26520.1, AT4G26530.1, AT5G03690.1

Automatic updates:

Name:	NM_001250386 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max fructose-bisphosphate aldolase (FBA), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:1186461..1186754 (- strand)
Length:	294
Type:	three_prime_UTR

Position:	Chr03:1186755..1187117 (- strand)
Length:	363
Type:	CDS

Position:	Chr03:1187327..1188009 (- strand)
Length:	683
Type:	CDS

Position:	Chr03:1188252..1188279 (- strand)
Length:	28
Type:	CDS

Position:	Chr03:1188280..1188363 (- strand)
Length:	84
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G015400.01
TCCCTCCACG CTTTTATCTA TATAGCTTTC TTCTTCCCTG TCATCTGTTA TCTCTTTCCC GCCATTTTCA AAGCTTAATT
AACCATGTCT GCCTTTGTTG GAAAGTATGC AGATGAGCTT ATAAAGAATG CCAAGTACAT AGCCACACCT GGGAAGGGTA
TCTTGGCTGC AGATGAGAGC ACCGGCACCA TTGGAAAGCG TTTAGCCAGC ATTAACGTTG AGAACATTGA GGCTAACCGC
CAAGCTCTTA GACAGCTTCT CTTCACCTCA CCGAATGCCC TCCAATACCT CTCTGGTGTC ATCCTCTTTG AGGAAACGCT
TTACCAGAAA ACCAGTGATG GGAAGCCTTT TGTAGAGGTT CTTGAAGAGA ACAATGTCAT CCCAGGCATC AAAGTGGACA
CGGGTGTTGT TGAGTTGGCT GGCACAAACG GTGAAACCAC CACACAGGGC TTTGACTCTC TCGGAGCTCG GTGCCAGAAG
TACTACAAGG CCGGTGCACG CTTTGCAAAG TGGCGTGCAG TTCTCAAAAT TGGCCCCACT GAGCCCTCTG AGCTTTCCAT
CCAGCAAAAT GCACAGGGCT TGGCACGCTA TGCCATCATC TGCCAGGAGA ATGGCCTTGT GCCCATTGTT GAGCCTGAGA
TTCTCACTGA TGGACCTCAT GACATAGCCA AATGTGCTGC TGTCACTGAG ACCGTGCTTG CATCTGTTTA CAAGGCTCTC
AATGATCACC ATGTCCTTCT TGAAGGAACT CTTCTCAAGC CCAACATGGT CACTCCAGGC TCTGATAGCC CAAAGGTAGC
AGCTGAGGTG ATTGCTGAGT ACACAGTTCA AGCACTCCGG AGGACTGTCC CAGCTGCGGT GCCAGGGATT GTGTTCCTGT
CTGGTGGACA GAGTGAAGAA GAAGCCACCC TCAACCTCAA TGCAATGAAC AAGTTGGAGG TGTTGAAGCC ATGGACTCTC
TCATTCTCAT TTGGGAGAGC ACTGCAGCAA AGCACACTCA AGACATGGGG TGGAAAGGAA GAGAATGTTG CCAAAGCTCA
AGGAGCATTC CTTGCAAGAT GCAAGGCCAA TTCTGAGGCA ACTCTGGGGA AGTTTGCTGG TGGAAGCCAA GCTGGGTTGG
CTTCTGAGAG TTTGTATGAG AAGAACTACA AGTATTAGGC TTCTAAGAGT GTGTCTGTTT CTCTGTTTGA AGTCTGTTTA
AATGTCAATC CATGGTTTTT GATTCTGTCA CGTTGAGGTA CATAGGAAAA CGTGAGAATG GAGAAACAAA CACACTGTAA
ATGAACTTGG GAACTGATCT GGGGTGGGGG CATTCTGGTA TATGTGATAC AGTCTAAGCA TTTGCTTCTG ATTAACACGT
TTATTTTTTG GGTTACATAT TTTACAAATC TAAGTTTACT TTATAGGAAC TAAATTTATC AGTTACCATG GTATCTCCAA
GTTACTGTCT GC

[show][hide][copy]CDS

>Vigan.03G015400.01
ATGTCTGCCT TTGTTGGAAA GTATGCAGAT GAGCTTATAA AGAATGCCAA GTACATAGCC ACACCTGGGA AGGGTATCTT
GGCTGCAGAT GAGAGCACCG GCACCATTGG AAAGCGTTTA GCCAGCATTA ACGTTGAGAA CATTGAGGCT AACCGCCAAG
CTCTTAGACA GCTTCTCTTC ACCTCACCGA ATGCCCTCCA ATACCTCTCT GGTGTCATCC TCTTTGAGGA AACGCTTTAC
CAGAAAACCA GTGATGGGAA GCCTTTTGTA GAGGTTCTTG AAGAGAACAA TGTCATCCCA GGCATCAAAG TGGACACGGG
TGTTGTTGAG TTGGCTGGCA CAAACGGTGA AACCACCACA CAGGGCTTTG ACTCTCTCGG AGCTCGGTGC CAGAAGTACT
ACAAGGCCGG TGCACGCTTT GCAAAGTGGC GTGCAGTTCT CAAAATTGGC CCCACTGAGC CCTCTGAGCT TTCCATCCAG
CAAAATGCAC AGGGCTTGGC ACGCTATGCC ATCATCTGCC AGGAGAATGG CCTTGTGCCC ATTGTTGAGC CTGAGATTCT
CACTGATGGA CCTCATGACA TAGCCAAATG TGCTGCTGTC ACTGAGACCG TGCTTGCATC TGTTTACAAG GCTCTCAATG
ATCACCATGT CCTTCTTGAA GGAACTCTTC TCAAGCCCAA CATGGTCACT CCAGGCTCTG ATAGCCCAAA GGTAGCAGCT
GAGGTGATTG CTGAGTACAC AGTTCAAGCA CTCCGGAGGA CTGTCCCAGC TGCGGTGCCA GGGATTGTGT TCCTGTCTGG
TGGACAGAGT GAAGAAGAAG CCACCCTCAA CCTCAATGCA ATGAACAAGT TGGAGGTGTT GAAGCCATGG ACTCTCTCAT
TCTCATTTGG GAGAGCACTG CAGCAAAGCA CACTCAAGAC ATGGGGTGGA AAGGAAGAGA ATGTTGCCAA AGCTCAAGGA
GCATTCCTTG CAAGATGCAA GGCCAATTCT GAGGCAACTC TGGGGAAGTT TGCTGGTGGA AGCCAAGCTG GGTTGGCTTC
TGAGAGTTTG TATGAGAAGA ACTACAAGTA TTAG

[show][hide][copy]PROTEIN

>Vigan.03G015400.01
MSAFVGKYAD ELIKNAKYIA TPGKGILAAD ESTGTIGKRL ASINVENIEA NRQALRQLLF TSPNALQYLS GVILFEETLY
QKTSDGKPFV EVLEENNVIP GIKVDTGVVE LAGTNGETTT QGFDSLGARC QKYYKAGARF AKWRAVLKIG PTEPSELSIQ
QNAQGLARYA IICQENGLVP IVEPEILTDG PHDIAKCAAV TETVLASVYK ALNDHHVLLE GTLLKPNMVT PGSDSPKVAA
EVIAEYTVQA LRRTVPAAVP GIVFLSGGQS EEEATLNLNA MNKLEVLKPW TLSFSFGRAL QQSTLKTWGG KEENVAKAQG
AFLARCKANS EATLGKFAGG SQAGLASESL YEKNYKY*