GBrowse Details

Vigan.03G015900.01

Basic Information:
Name: Vigan.03G015900.01
Multiple alignment
Variant Information
Position: Chr03:1243743..1247419 (+ strand)
Length: 3677
Functional Information:
Description: Similar to uncharacterized protein. [F6HCU9, Vitis vinifera]
GO: Biological Process: protein folding (GO:0006457)
Biological Process: response to stress (GO:0006950)
Molecular Function: ATP binding (GO:0005524)
Molecular Function: unfolded protein binding (GO:0051082)
InterPro: Heat shock protein Hsp90 family (IPR001404)
Histidine kinase-like ATPase, ATP-binding domain (IPR003594)
Heat shock protein Hsp90, conserved site (IPR019805)
Ribosomal protein S5 domain 2-type fold (IPR020568)
Heat shock protein Hsp90, N-terminal (IPR020575)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:116.97,322.87,310.68,222.19,416.92,197.88,91.03,166.16
Arabidopsis thaliana homolog: AT2G04030.1, AT3G07770.1, AT4G24190.1, AT5G52640.1, AT5G56000.1, AT5G56010.1, AT5G56030.2
Automatic updates:
Name: NM_001249670 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat shock protein 90-2 (LOC100194422), mRNA.
PubMed ID: 19061405 NCBI(pubmed)
Status: Known Variant
Name: NM_001249683 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat shock protein 90-1 (HSP90-1), mRNA.
PubMed ID: 27862521 NCBI(pubmed)
19061405 NCBI(pubmed)
Status: Known Variant
Name: NM_001253301 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max heat shock cognate protein 80-like (HSP90-2), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:1243743..1243898 (+ strand)
Length: 156
Type: five_prime_UTR
Position: Chr03:1243899..1244021 (+ strand)
Length: 123
Type: CDS
Position: Chr03:1245037..1245178 (+ strand)
Length: 142
Type: CDS
Position: Chr03:1245267..1247101 (+ strand)
Length: 1835
Type: CDS
Position: Chr03:1247102..1247419 (+ strand)
Length: 318
Type: three_prime_UTR


>Vigan.03G015900.01
TTAGAGTATA GAAGGATCTA GAATACCAAA ACCCTAGCCC AGCCCTCCTA CTTAACTTCA CACTCCGAAC ATTTCTCTTG
CTTCATTTCC ATCTTTTGCA TCTTTTGCGA CTCTTTCTTT TCCTGAATCT CAAACTCCAT AGAAGGCAGA TCCAAAATGT
CGGAGACCGA GACCTTTGCT TTTCAGGCAG AGATCAACCA GCTTCTCAGT CTTATCATCA ACACCTTCTA CAGCAACAAG
GAGATTTTCC TTCGTGAACT CATTAGCAAT GCCTCTGATG CTTTGGACAA GATTCGATTT GAGAGCCTTA CTGACAAGAG
CAAGCTTGAT GCTCAGCCAG AGTTGTTCAT CCACATTATT CCTGACAAGA CCAACAACAC CTTGACTATC ATTGATAGTG
GTGTTGGCAT GACTAAGGCT GATTTGGTGA ACAACTTGGG TACAATTGCG AGGTCTGGGA CCAAGGAGTT CATGGAAGCC
CTGGCTGCAG GTGCTGATGT GAGCATGATA GGTCAGTTTG GTGTTGGTTT CTACTCGGCT TATCTTGTTG CGGAGAAAGT
TATTGTTACA TCAAAGCACA ATGATGATGA GCAGTATGTT TGGGAATCCC AAGCTGGTGG GTCCTTCACT GTGACAAGGG
ATACAGATGG CGAGAGTCTT GGCAGGGGAA CAAAGATAAC CTTGTATCTA AAGGAAGATC AGCTTGAGTA TCTTGAGGAG
AGGCGTTTGA AGGACTTGAT AAAGAAGCAT TCTGAATTCA TCAGTTATCC AATTTCTCTC TGGATTGAGA AGACTACGGA
GAAGGAGATT TCTGATGATG AGGATGAGGA AGAGAAGAAG GAAGAGGAAG GCAAAGTTGA AGAAGTAGAT GAAGATAAGG
AGAAGGAAGA GAAGAAAAAG AAGAAAATTA AGGAGGTGTC TCATGAGTGG TCTCTGGTGA ACAAACAGAA ACCTATCTGG
ATGAGGAAAC CCGAAGAGAT TACCAAAGAG GAATATGCTG CTTTCTATAA GAGTCTTACC AATGATTGGG AAGAACATTT
GGCTGTTAAG CACTTCTCTG TAGAGGGTCA GTTGGAGTTT AAGGCTATCC TCTTTATCCC AAAGAGGGCA CCTTTTGATA
TCTTTGACAC AAGGAAGAAG CCTAACAACA TTAAACTGTA TGTACGCAGA GTCTTCATCA TGGACAACTG CGAGGAGTTG
ATTCCAGAAT ATCTTAGCTT TGTTAAGGGT ATTGTGGATT CTGAGGACCT TCCTCTTAAC ATTTCTAGAG AAATGCTGCA
GCAAAACAAG ATTTTGAAGG TCATCCGCAA GAACTTGGTT AAGAAGTGCG TTGAGCTTTT CTTTGAAATT GCTGAGAACA
AGGAAGATTA TAACAAGTTC TATGAAGCCT TCTCTAAGAA CCTTAAATTG GGTATCCATG AGGATTCCCA GAACAAGTCA
AAGCTAGCTG AATTGCTGAG GTATCACTCA ACCAAGAGCG GTGATGAGAT GACTAGCCTG AAGGACTATG TTACCAGGAT
GAAGGAAGGA CAGAGTGACA TCTACTACAT TACTGGTGAA AGCAGGAAAG CTGTAGAGAA TTCCCCCTTC TTGGAAAGGC
TGAAAAAGAA GGGATACGAG GTGCTTTTCA TGGTTGATGC TATTGATGAA TATGCCGTTG GTCAGCTTAA GGAATTTGAG
GGAAAGAAGT TGGTGTCTGC TACTAAAGAA GGTTTGAAAC TTGATGAGAG TGAGGACGAG AAGAAAAGGA AGGAAGAATT
GAAGGAGAAA TTTGACGGTC TTTGCAAGGT GATAAAGGAT GTGTTGGGTG ACAAGGTGGA GAAGGTTGTG GTGTCTGATC
GTGTTGTGGA TTCTCCATGC TGTCTGGTGA CTGGTGAATA TGGTTGGACA GCTAACATGG AAAGGATAAT GAAGGCGCAG
GCATTGAGGG ACAGCAGCAT GGCTGGATAC ATGTCAAGCA AGAAGACGAT GGAGATTAAC CCTGAGAATC CCATCATGGA
TGAGCTGAGG AAGCGTGCAG ATGCCGACAA GAATGATAAA TCTGTGAAGG ATCTCGTTCT CTTGCTCTTT GAGACTGCTC
TTCTAACTTC TGGATTCAGC CTTGATGATC CCAACACTTT CGGTAACAGA ATTCACAGGA TGCTGAAGCT TGGACTCAGC
ATTGACGAGG ATGCCGGTGA AGCTGATGCT GACATGCCAC CTCTGGAAGA TGCTGATGCT GATGCTGAGG GCAGCAAGAT
GGAGGAAGTT GATTAAGTCT AATTCTATTA TCTCTTCTTA CCATTATGAT TCCAGAACAA TCTTTTTTAT ATTTAGTGTT
TGTTTTTAAA TTTTGTAATA TTTGAACTTT TGTTAAGTGG GGTGTCATGT TAAAATTTTT GTGAGTTTTT TAATATTTTA
AATATTTGAT GCTTAGTATG AAAAAGTGTA GTTAGTTTTA GTAATCCTTT TAATTAGTAA ATGTGTGCCT TACTAGTTAC
TTTTACATTT AAAATATATT TTTAAATGTA AAGTAATATA TTTTTAGTTA CATGTTATCC ATTATTCCGT ATATAGCAAA
TATTTGTGTT GAAA

>Vigan.03G015900.01
ATGTCGGAGA CCGAGACCTT TGCTTTTCAG GCAGAGATCA ACCAGCTTCT CAGTCTTATC ATCAACACCT TCTACAGCAA
CAAGGAGATT TTCCTTCGTG AACTCATTAG CAATGCCTCT GATGCTTTGG ACAAGATTCG ATTTGAGAGC CTTACTGACA
AGAGCAAGCT TGATGCTCAG CCAGAGTTGT TCATCCACAT TATTCCTGAC AAGACCAACA ACACCTTGAC TATCATTGAT
AGTGGTGTTG GCATGACTAA GGCTGATTTG GTGAACAACT TGGGTACAAT TGCGAGGTCT GGGACCAAGG AGTTCATGGA
AGCCCTGGCT GCAGGTGCTG ATGTGAGCAT GATAGGTCAG TTTGGTGTTG GTTTCTACTC GGCTTATCTT GTTGCGGAGA
AAGTTATTGT TACATCAAAG CACAATGATG ATGAGCAGTA TGTTTGGGAA TCCCAAGCTG GTGGGTCCTT CACTGTGACA
AGGGATACAG ATGGCGAGAG TCTTGGCAGG GGAACAAAGA TAACCTTGTA TCTAAAGGAA GATCAGCTTG AGTATCTTGA
GGAGAGGCGT TTGAAGGACT TGATAAAGAA GCATTCTGAA TTCATCAGTT ATCCAATTTC TCTCTGGATT GAGAAGACTA
CGGAGAAGGA GATTTCTGAT GATGAGGATG AGGAAGAGAA GAAGGAAGAG GAAGGCAAAG TTGAAGAAGT AGATGAAGAT
AAGGAGAAGG AAGAGAAGAA AAAGAAGAAA ATTAAGGAGG TGTCTCATGA GTGGTCTCTG GTGAACAAAC AGAAACCTAT
CTGGATGAGG AAACCCGAAG AGATTACCAA AGAGGAATAT GCTGCTTTCT ATAAGAGTCT TACCAATGAT TGGGAAGAAC
ATTTGGCTGT TAAGCACTTC TCTGTAGAGG GTCAGTTGGA GTTTAAGGCT ATCCTCTTTA TCCCAAAGAG GGCACCTTTT
GATATCTTTG ACACAAGGAA GAAGCCTAAC AACATTAAAC TGTATGTACG CAGAGTCTTC ATCATGGACA ACTGCGAGGA
GTTGATTCCA GAATATCTTA GCTTTGTTAA GGGTATTGTG GATTCTGAGG ACCTTCCTCT TAACATTTCT AGAGAAATGC
TGCAGCAAAA CAAGATTTTG AAGGTCATCC GCAAGAACTT GGTTAAGAAG TGCGTTGAGC TTTTCTTTGA AATTGCTGAG
AACAAGGAAG ATTATAACAA GTTCTATGAA GCCTTCTCTA AGAACCTTAA ATTGGGTATC CATGAGGATT CCCAGAACAA
GTCAAAGCTA GCTGAATTGC TGAGGTATCA CTCAACCAAG AGCGGTGATG AGATGACTAG CCTGAAGGAC TATGTTACCA
GGATGAAGGA AGGACAGAGT GACATCTACT ACATTACTGG TGAAAGCAGG AAAGCTGTAG AGAATTCCCC CTTCTTGGAA
AGGCTGAAAA AGAAGGGATA CGAGGTGCTT TTCATGGTTG ATGCTATTGA TGAATATGCC GTTGGTCAGC TTAAGGAATT
TGAGGGAAAG AAGTTGGTGT CTGCTACTAA AGAAGGTTTG AAACTTGATG AGAGTGAGGA CGAGAAGAAA AGGAAGGAAG
AATTGAAGGA GAAATTTGAC GGTCTTTGCA AGGTGATAAA GGATGTGTTG GGTGACAAGG TGGAGAAGGT TGTGGTGTCT
GATCGTGTTG TGGATTCTCC ATGCTGTCTG GTGACTGGTG AATATGGTTG GACAGCTAAC ATGGAAAGGA TAATGAAGGC
GCAGGCATTG AGGGACAGCA GCATGGCTGG ATACATGTCA AGCAAGAAGA CGATGGAGAT TAACCCTGAG AATCCCATCA
TGGATGAGCT GAGGAAGCGT GCAGATGCCG ACAAGAATGA TAAATCTGTG AAGGATCTCG TTCTCTTGCT CTTTGAGACT
GCTCTTCTAA CTTCTGGATT CAGCCTTGAT GATCCCAACA CTTTCGGTAA CAGAATTCAC AGGATGCTGA AGCTTGGACT
CAGCATTGAC GAGGATGCCG GTGAAGCTGA TGCTGACATG CCACCTCTGG AAGATGCTGA TGCTGATGCT GAGGGCAGCA
AGATGGAGGA AGTTGATTAA 

>Vigan.03G015900.01
MSETETFAFQ AEINQLLSLI INTFYSNKEI FLRELISNAS DALDKIRFES LTDKSKLDAQ PELFIHIIPD KTNNTLTIID
SGVGMTKADL VNNLGTIARS GTKEFMEALA AGADVSMIGQ FGVGFYSAYL VAEKVIVTSK HNDDEQYVWE SQAGGSFTVT
RDTDGESLGR GTKITLYLKE DQLEYLEERR LKDLIKKHSE FISYPISLWI EKTTEKEISD DEDEEEKKEE EGKVEEVDED
KEKEEKKKKK IKEVSHEWSL VNKQKPIWMR KPEEITKEEY AAFYKSLTND WEEHLAVKHF SVEGQLEFKA ILFIPKRAPF
DIFDTRKKPN NIKLYVRRVF IMDNCEELIP EYLSFVKGIV DSEDLPLNIS REMLQQNKIL KVIRKNLVKK CVELFFEIAE
NKEDYNKFYE AFSKNLKLGI HEDSQNKSKL AELLRYHSTK SGDEMTSLKD YVTRMKEGQS DIYYITGESR KAVENSPFLE
RLKKKGYEVL FMVDAIDEYA VGQLKEFEGK KLVSATKEGL KLDESEDEKK RKEELKEKFD GLCKVIKDVL GDKVEKVVVS
DRVVDSPCCL VTGEYGWTAN MERIMKAQAL RDSSMAGYMS SKKTMEINPE NPIMDELRKR ADADKNDKSV KDLVLLLFET
ALLTSGFSLD DPNTFGNRIH RMLKLGLSID EDAGEADADM PPLEDADADA EGSKMEEVD*