GBrowse Details

Vigan.03G016800.01

Basic Information:
Name: Vigan.03G016800.01
Multiple alignment
Variant Information
Position: Chr03:1293225..1296208 (+ strand)
Length: 2984
Functional Information:
Description: Similar to Uncharacterized protein. [K7KBN4, Glycine max]
InterPro: Uncharacterised protein family UPF0172 (IPR005366)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:80.34,61.07,33.13,32.48,54.66,40.89,68.47,37.09
Arabidopsis thaliana homolog: AT5G55940.1
Automatic updates:
Name: NM_001248493 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527135 (LOC100527135), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001248555 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306212 (LOC100306212), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:1293225..1293580 (+ strand)
Length: 356
Type: five_prime_UTR
Position: Chr03:1293581..1293790 (+ strand)
Length: 210
Type: CDS
Position: Chr03:1294017..1294163 (+ strand)
Length: 147
Type: CDS
Position: Chr03:1294292..1294351 (+ strand)
Length: 60
Type: CDS
Position: Chr03:1295570..1295733 (+ strand)
Length: 164
Type: CDS
Position: Chr03:1295840..1295870 (+ strand)
Length: 31
Type: CDS
Position: Chr03:1295871..1296208 (+ strand)
Length: 338
Type: three_prime_UTR


>Vigan.03G016800.01
CTACAGTAGT GGATCCTAAA AGGTTAACCT ATCAATTAAG TTTCAAATAG TAAAATACTC CCAACATTTT TTCCAGGCCC
ATCTTTTAAA GGCCATGGTC CGTGTAATAA TTGGGCCCTA GCCCAGGAAC TACTGACCCA GGCCTGACAA ACCTTAGATA
CCGATGAACG ATTGCAATTG TAGGATTGCG AAGGATAGAA CCGTGACAAA ACGACGTCGT TTGAATTTGG GGTGAAGTGC
GAAGTCCACA ACGGTTGATA GTTGATTGCG TCTGCTTATG TTTTGTGTTT GACATTAAAA CAGAAGGAAA CGGAGCAGAA
CAGAGACCTT AAACCTTTGT GTCGAGAATC TTAGCCATGG GTAGCAACGG ATTGAGGTAC GAGATCGCAC AAAACGCTTA
CATCAAACTC GTGCTTCACT CCCTCAAACA CCCAACCTCC GCCGTCAACG GCATCTTGAT CGGTCGCATC TCCCCTTCCA
ACGACGTCGT CGAGATCGCC GATGCCGTCC CTCTCTTCCA CTCTCACATT CCTCTTCTTC CGCAATTGGA GATATCTCTC
ATTCTGATAG AAGAATATTT TTCTGCGAAA GGGTTGAACA TAGTGGGCTA TTTTCACGCG AACGAGAGAT CTGATGACAG
TGAGCTTGGT AGTGTGGCCA AGAATATCGG TGACCACATA TGCCGCTACT TTCCCCAAGC CGCCGTTCTA TTGTTAGATA
ACAAGAAGCT TGATGCTTTG AAAAAGAGCA AGGAACGTAG TGCCATAATG CAGCTTTATG TTAGGGATAC ATCTAAGAAC
TGGAAGTTGG TTCCCTCTGA TGCAAACCGT TTCTCTCTCA AAGAGCCATC GGCAAATGTA GTCTTATTGG ACTATATTGC
AACTGAGAAG TGGAATGGAA TTGTAGATTT TGATGATCAT TTGGATGACA TTAGCAAGGA TTGGCTCAAC CCAGGGCTGT
TCAACTGATC CCTCCACATG TCTTCATTTT GCACGATTTA CTTTGCAAGT GGAGGATGTT CAGACTTATA TTGTGGTGCA
AATGTTGGAT CGTCAACAAT GAACAATTAG GGACTATAAA TTTGACCTCA GGGAAGTTGC TTCATGAAGA TTTTTCAGTT
GCATAAACAG GATATTTACT ACCAGTTCGA AAAGGATTTT GGTTGCAGAG CCTTTTTTGT TTTTTTTTTT CTTGGGTGTA
GGTATACTAT AGTGGAGTTT GTTTGCTTAT CTGCGAATTG TGATGTTGTC TTTCTTGGTA TAAACAACAT AACCATCACG
TCCATTATCT AAGGCCATGT TTGGGG

>Vigan.03G016800.01
ATGGGTAGCA ACGGATTGAG GTACGAGATC GCACAAAACG CTTACATCAA ACTCGTGCTT CACTCCCTCA AACACCCAAC
CTCCGCCGTC AACGGCATCT TGATCGGTCG CATCTCCCCT TCCAACGACG TCGTCGAGAT CGCCGATGCC GTCCCTCTCT
TCCACTCTCA CATTCCTCTT CTTCCGCAAT TGGAGATATC TCTCATTCTG ATAGAAGAAT ATTTTTCTGC GAAAGGGTTG
AACATAGTGG GCTATTTTCA CGCGAACGAG AGATCTGATG ACAGTGAGCT TGGTAGTGTG GCCAAGAATA TCGGTGACCA
CATATGCCGC TACTTTCCCC AAGCCGCCGT TCTATTGTTA GATAACAAGA AGCTTGATGC TTTGAAAAAG AGCAAGGAAC
GTAGTGCCAT AATGCAGCTT TATGTTAGGG ATACATCTAA GAACTGGAAG TTGGTTCCCT CTGATGCAAA CCGTTTCTCT
CTCAAAGAGC CATCGGCAAA TGTAGTCTTA TTGGACTATA TTGCAACTGA GAAGTGGAAT GGAATTGTAG ATTTTGATGA
TCATTTGGAT GACATTAGCA AGGATTGGCT CAACCCAGGG CTGTTCAACT GA

>Vigan.03G016800.01
MGSNGLRYEI AQNAYIKLVL HSLKHPTSAV NGILIGRISP SNDVVEIADA VPLFHSHIPL LPQLEISLIL IEEYFSAKGL
NIVGYFHANE RSDDSELGSV AKNIGDHICR YFPQAAVLLL DNKKLDALKK SKERSAIMQL YVRDTSKNWK LVPSDANRFS
LKEPSANVVL LDYIATEKWN GIVDFDDHLD DISKDWLNPG LFN*