GBrowse Details

Vigan.03G017100.01

Basic Information:
Name: Vigan.03G017100.01
Multiple alignment
Variant Information
Position: Chr03:1316177..1318539 (+ strand)
Length: 2363
Functional Information:
Description: Similar to Uncharacterized protein. [I1M6F0, Glycine max]
InterPro: Red chlorophyll catabolite reductase (IPR009439)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:48.16,9.94,28.89,35.31,14.37,58.90,13.83,16.56
Arabidopsis thaliana homolog: AT4G37000.1
Automatic updates:
Name: NM_001254021 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max red chlorophyll catabolite reductase, chloroplastic-like (LOC100780934), mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:1316177..1316225 (+ strand)
Length: 49
Type: five_prime_UTR
Position: Chr03:1316226..1316621 (+ strand)
Length: 396
Type: CDS
Position: Chr03:1317496..1318107 (+ strand)
Length: 612
Type: CDS
Position: Chr03:1318108..1318539 (+ strand)
Length: 432
Type: three_prime_UTR


>Vigan.03G017100.01
AAACAGTCTG AAAGGATGAA AACAGTGTAA GAGAGAATAA TAGTTACAGA TGATGGAAGT GATGATCTGT GACCATTTTC
GGTGTTCTCC ACTTTCCATC TTATCTTCTT ATCGTTCTTC TTTTTCTCCT TCAACACGTT ACCCTCTCTC TGTACCTTCT
TATTCTCCTT CTTTCAGGCT TAAACCTTCT TCTTCATCTC TCTCTTCCTC TCGCATGGAA GAGACCCAGG AGACCCACGA
CCATGGCCGC TCCAAATTCA TTGACTTTCC GTTCGTTTCA GCTGCCCAGA AGAATCTGAT GGTCGAACTC GTTTCGAAGC
TTGAGGATCG CTTTCATTCT CAGCTTCTTC CTTGCACACT CCCCCCTGAT GTTCAGTATT ACCAGAGCCA AACTGGCACT
GCCCAAGCTT CCCTTCATAT CAGATCAGCC ACTGATGACT CTCCGGTAGA TTTTGTGTTG GGAAGCTGGG TGCACTCTGA
GTTACCAACA GGAGGGTCCT TAGATATAAC TAGTCTTTCA GCCTATCTTA ACAGTTCAAC CGATGCACCA AATTTTGTGT
TTGAAATGAT CCGCAGTAGT CCAACAATGC TAGTTCTCAT TCTTGATTTG CCTCCCCGGA AAGACCTTGT GCTTTGGCCA
GATGACCTCA AAACGTTCTA TGAAGACACT CAATTGGATA CTCACAGGCA GGCTCTGGAA AGAGTTCCAG AGGTTAAACC
ATATTTCTCT TCTTCCCTTT ACATCCGCAG TGTTTCCTCC CCTACAACCA TAATGGTTCG CATTGTGACT GAAAATGGTG
GAGTAGAACG CATGGAGGAG ATCATCAGGG ACCATTTGGA CCCCATTTCA AAGCAAGTAT TGGGGATCTG GTTGGATCAT
TGTGCTTGTG CCCAGCGAGA TGTTGGAGAG GCAGAAAGAG CTTATCTGAA AAAAAGGGAT GGTCTCATTA GAAACAAGAC
AATTGAGATT GATCTTGGTT CAAGCTTCCC CAGGTTGTTT GGTCCAGAAG TGGCAAACCG AGTACTGGAG GCTATCAAGG
GGTATTTTAC TGTCTAGGAT TCTAATTTAT TTGGAATTGT TGGACATTCT GTGTTACATA CATGTAACTA ATTAGCCTTG
TAGTAAAATG AGGCTTCAGT ATTCGTTGTA TCTCCAGTCA AATGTGAAAT CCATAAATGA TTCTGATAGT TTCTACTTTC
TACTTTCTCC CTCCTTTTCT TTGCTAGGGA TGATTCATGA CAATGGCACT TTTCTAAGCC TTTATTGAAA TCATTCCATG
TGCTTCCATT CCAAGCTCTT TGTATGACCT GAGTTTGAAA CCCCACTACT AACTTCCTGA ACTAGAAGCA AAATTTTTAA
ATTGGAAGTA TTTTAGCATG CTTGGAAGTA TTTCTGTAAG AAATGTTGTA AAGGTTTCTA TATAATCTAT TCTTGAAGTA
GCCAGTGCCA TTTTTTCAAG CCATAGTTTT GGCACAAAGT GCCATTGTA

>Vigan.03G017100.01
ATGATGGAAG TGATGATCTG TGACCATTTT CGGTGTTCTC CACTTTCCAT CTTATCTTCT TATCGTTCTT CTTTTTCTCC
TTCAACACGT TACCCTCTCT CTGTACCTTC TTATTCTCCT TCTTTCAGGC TTAAACCTTC TTCTTCATCT CTCTCTTCCT
CTCGCATGGA AGAGACCCAG GAGACCCACG ACCATGGCCG CTCCAAATTC ATTGACTTTC CGTTCGTTTC AGCTGCCCAG
AAGAATCTGA TGGTCGAACT CGTTTCGAAG CTTGAGGATC GCTTTCATTC TCAGCTTCTT CCTTGCACAC TCCCCCCTGA
TGTTCAGTAT TACCAGAGCC AAACTGGCAC TGCCCAAGCT TCCCTTCATA TCAGATCAGC CACTGATGAC TCTCCGGTAG
ATTTTGTGTT GGGAAGCTGG GTGCACTCTG AGTTACCAAC AGGAGGGTCC TTAGATATAA CTAGTCTTTC AGCCTATCTT
AACAGTTCAA CCGATGCACC AAATTTTGTG TTTGAAATGA TCCGCAGTAG TCCAACAATG CTAGTTCTCA TTCTTGATTT
GCCTCCCCGG AAAGACCTTG TGCTTTGGCC AGATGACCTC AAAACGTTCT ATGAAGACAC TCAATTGGAT ACTCACAGGC
AGGCTCTGGA AAGAGTTCCA GAGGTTAAAC CATATTTCTC TTCTTCCCTT TACATCCGCA GTGTTTCCTC CCCTACAACC
ATAATGGTTC GCATTGTGAC TGAAAATGGT GGAGTAGAAC GCATGGAGGA GATCATCAGG GACCATTTGG ACCCCATTTC
AAAGCAAGTA TTGGGGATCT GGTTGGATCA TTGTGCTTGT GCCCAGCGAG ATGTTGGAGA GGCAGAAAGA GCTTATCTGA
AAAAAAGGGA TGGTCTCATT AGAAACAAGA CAATTGAGAT TGATCTTGGT TCAAGCTTCC CCAGGTTGTT TGGTCCAGAA
GTGGCAAACC GAGTACTGGA GGCTATCAAG GGGTATTTTA CTGTCTAG

>Vigan.03G017100.01
MMEVMICDHF RCSPLSILSS YRSSFSPSTR YPLSVPSYSP SFRLKPSSSS LSSSRMEETQ ETHDHGRSKF IDFPFVSAAQ
KNLMVELVSK LEDRFHSQLL PCTLPPDVQY YQSQTGTAQA SLHIRSATDD SPVDFVLGSW VHSELPTGGS LDITSLSAYL
NSSTDAPNFV FEMIRSSPTM LVLILDLPPR KDLVLWPDDL KTFYEDTQLD THRQALERVP EVKPYFSSSL YIRSVSSPTT
IMVRIVTENG GVERMEEIIR DHLDPISKQV LGIWLDHCAC AQRDVGEAER AYLKKRDGLI RNKTIEIDLG SSFPRLFGPE
VANRVLEAIK GYFTV*