GBrowse Details

Vigan.03G023700.01

Basic Information:
Name: Vigan.03G023700.01
Multiple alignment
Variant Information
Position: Chr03:1744290..1747661 (- strand)
Length: 3372
Functional Information:
Description: Similar to Uncharacterized protein. [I1M6K5, Glycine max]
InterPro: Pirin, N-terminal domain (IPR003829)
Pirin, C-terminal domain (IPR008778)
RmlC-like cupin domain (IPR011051)
Pirin (IPR012093)
RmlC-like jelly roll fold (IPR014710)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.38,3.55,12.30,2.93,3.76,22.59,27.06
Arabidopsis thaliana homolog: AT1G50590.1
Automatic updates:
Name: NM_001255572 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pirin-like protein At1g50590-like (LOC100811930), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:1744290..1744510 (- strand)
Length: 221
Type: three_prime_UTR
Position: Chr03:1744511..1745015 (- strand)
Length: 505
Type: CDS
Position: Chr03:1746122..1746288 (- strand)
Length: 167
Type: CDS
Position: Chr03:1746883..1746911 (- strand)
Length: 29
Type: CDS
Position: Chr03:1747024..1747062 (- strand)
Length: 39
Type: CDS
Position: Chr03:1747171..1747220 (- strand)
Length: 50
Type: CDS
Position: Chr03:1747391..1747506 (- strand)
Length: 116
Type: CDS
Position: Chr03:1747507..1747661 (- strand)
Length: 155
Type: five_prime_UTR


>Vigan.03G023700.01
GTTTCGAGGT TTGACTTTCC TAATAGTGAA AACCTCTGCC TCTGTATCTA CCTCTCACGC CACACCCCCC ACTTTCCTAT
ATATACCTTA AACGATCTTT GTCTTGCTCC TCACATTTCC ATCATTCAAC AACTTTTGCT TCTCTTTTCC ACAAAATGCC
GAACCAAGAT ATTAGCAGCT ACCTTAAAGA ACCTCGTCTT GTGGCCAGAA AGTTCTTGGC CAGACCTCAA CATGAGGGTG
TTGGGGCAGT TGTTAGAAGA AGCATAGGGA GATTTGAGCT CAAGAACTTC GATCCTTTCC TTGTCTTGGA TGAATTCTCA
GTCACGGCTC CTGCTGGGTT TCCTGATCAT CCACACAGAG GATTTGAGAC AGTCACATAC ATGTTGCAGG GAGCCATAAC
ACATGAAGAT TTTGATGGAC GAAAGGGAAC AATTGAAGCT GGTGACTTGC AGTGGATGAC TGCAGGAAGA GGGATAGTTC
ACTCAGAAAT GCCTGCAGCT CAAGGAACTC AAAAGGGTCT TCAGCTGTGG ATCAACCTCT CTTCAAAACA TAAAATGATT
GAGCCAAGGT ACCAAGAAAT GCTGAGCAAG GACATAGCAG AAACTATGAT AGATGGAATC AAAGTCAGAG TGATAGCAGG
GGAAGCTCTT GGAATAAAGT CTCCAATCTA CACAAGAACA CCAACCATGT ACTTGGATTT TTGCCTCAAA CCTGGTGCTC
ACTTGCAGCA ACTTATACCA AAATCTTGGA ATGCTTTTGT GTACATATTG GAAGGAGAGG GTGTTTTTGG GAACCAAAAG
TCTCAACCTG TGACTTCTCA TCATATACTT CTTCTTGGTT CTGGGGATGG CCTTGAAGCA TGGAACAAAT CTTCAAAGGT
TCTTAGGTTC ATTTTGGTTG GAGGGGAACC TTTGGGGGAA CCTGTGGTGC AATTTGGACC TTTTGTGATG AACACTCAAG
AAGAGATTGA CCAAACAATT GATGATTTTG AGAATTATAC CAATGGATTT GAGAAAGCAA GACACTGGAG ATCTGAAACT
TCACTTAGCC TTGATTATTG ATTTTGTATT AGGTCACATT TGTTGGTTGA TTTGGGAAAG ATGGGAACAA AAATAAGTTC
TGATGTAAAT TGGAATGTAT CAATTAGGTC AAGTATTTCT ATCCTTTTTA ACTTTATATT ATGTTTATAC TATACTGTTT
GAAGGCTTAA ATTAAAATCC ACATGTAGTA GCAGGTAAAA AAGAACAGTG AAATTATAGT TAATTACCCT TTTCATTTTT
AA

>Vigan.03G023700.01
ATGCCGAACC AAGATATTAG CAGCTACCTT AAAGAACCTC GTCTTGTGGC CAGAAAGTTC TTGGCCAGAC CTCAACATGA
GGGTGTTGGG GCAGTTGTTA GAAGAAGCAT AGGGAGATTT GAGCTCAAGA ACTTCGATCC TTTCCTTGTC TTGGATGAAT
TCTCAGTCAC GGCTCCTGCT GGGTTTCCTG ATCATCCACA CAGAGGATTT GAGACAGTCA CATACATGTT GCAGGGAGCC
ATAACACATG AAGATTTTGA TGGACGAAAG GGAACAATTG AAGCTGGTGA CTTGCAGTGG ATGACTGCAG GAAGAGGGAT
AGTTCACTCA GAAATGCCTG CAGCTCAAGG AACTCAAAAG GGTCTTCAGC TGTGGATCAA CCTCTCTTCA AAACATAAAA
TGATTGAGCC AAGGTACCAA GAAATGCTGA GCAAGGACAT AGCAGAAACT ATGATAGATG GAATCAAAGT CAGAGTGATA
GCAGGGGAAG CTCTTGGAAT AAAGTCTCCA ATCTACACAA GAACACCAAC CATGTACTTG GATTTTTGCC TCAAACCTGG
TGCTCACTTG CAGCAACTTA TACCAAAATC TTGGAATGCT TTTGTGTACA TATTGGAAGG AGAGGGTGTT TTTGGGAACC
AAAAGTCTCA ACCTGTGACT TCTCATCATA TACTTCTTCT TGGTTCTGGG GATGGCCTTG AAGCATGGAA CAAATCTTCA
AAGGTTCTTA GGTTCATTTT GGTTGGAGGG GAACCTTTGG GGGAACCTGT GGTGCAATTT GGACCTTTTG TGATGAACAC
TCAAGAAGAG ATTGACCAAA CAATTGATGA TTTTGAGAAT TATACCAATG GATTTGAGAA AGCAAGACAC TGGAGATCTG
AAACTTCACT TAGCCTTGAT TATTGA

>Vigan.03G023700.01
MPNQDISSYL KEPRLVARKF LARPQHEGVG AVVRRSIGRF ELKNFDPFLV LDEFSVTAPA GFPDHPHRGF ETVTYMLQGA
ITHEDFDGRK GTIEAGDLQW MTAGRGIVHS EMPAAQGTQK GLQLWINLSS KHKMIEPRYQ EMLSKDIAET MIDGIKVRVI
AGEALGIKSP IYTRTPTMYL DFCLKPGAHL QQLIPKSWNA FVYILEGEGV FGNQKSQPVT SHHILLLGSG DGLEAWNKSS
KVLRFILVGG EPLGEPVVQF GPFVMNTQEE IDQTIDDFEN YTNGFEKARH WRSETSLSLD Y*