VIGGS:GBrowse

Vigan.03G030400.01

Basic Information:

Name:	Vigan.03G030400.01 Multiple alignment Variant Information
Position:	Chr03:2363230..2364655 (- strand)
Length:	1426

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M6Q4, Glycine max]
GO:	Cellular Component: mitochondrial matrix (GO:0005759)
InterPro:	Mitochondrial glycoprotein (IPR003428)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:63.90,104.05,15.66,13.68,37.22,39.31,20.47,12.08
Arabidopsis thaliana homolog:	AT4G32605.1

Automatic updates:

Name:	NM_001249547 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527468 (LOC100527468), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:2363230..2363410 (- strand)
Length:	181
Type:	CDS

Position:	Chr03:2364099..2364415 (- strand)
Length:	317
Type:	CDS

Position:	Chr03:2364506..2364655 (- strand)
Length:	150
Type:	CDS

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G030400.01
ATGTGGAAGC GAGCGGTGGT GGGCGCCGTG GGTGCTCTCC GGCGGCCGTT CTCGTCGGAA GGTGGCGGTA TCTCCACCGC
CGTCAACTCG ATGCTTCTCC GCTCCCTGAA GGATCACTAT CAAGAAGTCG CCAAAATGAA CATGCCTCCT AAAGTGAGTC
CTCCGTCGCC GTTCACCATC GTGAAGGGGG CTCTGGACTC ACATGGTCCG GTTCTGAAGC GCAGCTACGG CGAAGAAGAG
GTGACCGTCT ACGTGATGCG ACTGTTGGCC CCCGAGGACG AGGATTCTGC CACGGACCAG CTCTTCATCC ATGTCGATGT
CTTCAAACCC TCGCAGAAGG AATCTTTGAT TTTCTTATGC GGTTTGTACG AGGATGCTCT GGGGATTCAC TCTGTTTCCA
TGAGGCCTAA GCTCGAAGAC TCTGGCTACC TCCTCATCCC TTCGCAATAC ACTGGCCCTG TTTTCGCGGA TCTAGATGAT
AAGATGAGAG ATGCGTTTCA CACTTACATT GAGGAACGAG GAGTGAACGA GTCTCTCTTT AAATTTCTTC AAGCGTGGCT
ATATGTGAAG GAACATCGAA ATCTGATGCG GTGGTTCAAA ACGATGGGCT TGTTCATTGA TGGAAAGAAA CCAGCTACAG
GTGTTTAA

[show][hide][copy]CDS

>Vigan.03G030400.01
ATGTGGAAGC GAGCGGTGGT GGGCGCCGTG GGTGCTCTCC GGCGGCCGTT CTCGTCGGAA GGTGGCGGTA TCTCCACCGC
CGTCAACTCG ATGCTTCTCC GCTCCCTGAA GGATCACTAT CAAGAAGTCG CCAAAATGAA CATGCCTCCT AAAGTGAGTC
CTCCGTCGCC GTTCACCATC GTGAAGGGGG CTCTGGACTC ACATGGTCCG GTTCTGAAGC GCAGCTACGG CGAAGAAGAG
GTGACCGTCT ACGTGATGCG ACTGTTGGCC CCCGAGGACG AGGATTCTGC CACGGACCAG CTCTTCATCC ATGTCGATGT
CTTCAAACCC TCGCAGAAGG AATCTTTGAT TTTCTTATGC GGTTTGTACG AGGATGCTCT GGGGATTCAC TCTGTTTCCA
TGAGGCCTAA GCTCGAAGAC TCTGGCTACC TCCTCATCCC TTCGCAATAC ACTGGCCCTG TTTTCGCGGA TCTAGATGAT
AAGATGAGAG ATGCGTTTCA CACTTACATT GAGGAACGAG GAGTGAACGA GTCTCTCTTT AAATTTCTTC AAGCGTGGCT
ATATGTGAAG GAACATCGAA ATCTGATGCG GTGGTTCAAA ACGATGGGCT TGTTCATTGA TGGAAAGAAA CCAGCTACAG
GTGTTTAA

[show][hide][copy]PROTEIN

>Vigan.03G030400.01
MWKRAVVGAV GALRRPFSSE GGGISTAVNS MLLRSLKDHY QEVAKMNMPP KVSPPSPFTI VKGALDSHGP VLKRSYGEEE
VTVYVMRLLA PEDEDSATDQ LFIHVDVFKP SQKESLIFLC GLYEDALGIH SVSMRPKLED SGYLLIPSQY TGPVFADLDD
KMRDAFHTYI EERGVNESLF KFLQAWLYVK EHRNLMRWFK TMGLFIDGKK PATGV*