GBrowse Details

Vigan.03G030800.01

Basic Information:
Name: Vigan.03G030800.01
Multiple alignment
Variant Information
Position: Chr03:2391291..2394957 (+ strand)
Length: 3667
Functional Information:
Description: Similar to Uncharacterized protein. [I1M6Q8, Glycine max]
GO: Biological Process: vesicle-mediated transport (GO:0016192)
Biological Process: Golgi vesicle transport (GO:0048193)
Cellular Component: membrane (GO:0016020)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
t-SNARE (IPR010989)
Syntaxin 6, N-terminal (IPR015260)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.51,9.57,10.78,13.54,11.80,12.18,8.82,16.03
Automatic updates:
Name: NM_001252992 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max syntaxin-61-like (LOC100795447), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:2391291..2391379 (+ strand)
Length: 89
Type: five_prime_UTR
Position: Chr03:2391380..2391433 (+ strand)
Length: 54
Type: CDS
Position: Chr03:2391843..2391953 (+ strand)
Length: 111
Type: CDS
Position: Chr03:2392740..2392853 (+ strand)
Length: 114
Type: CDS
Position: Chr03:2393029..2393219 (+ strand)
Length: 191
Type: CDS
Position: Chr03:2393750..2393840 (+ strand)
Length: 91
Type: CDS
Position: Chr03:2394210..2394275 (+ strand)
Length: 66
Type: CDS
Position: Chr03:2394417..2394527 (+ strand)
Length: 111
Type: CDS
Position: Chr03:2394528..2394957 (+ strand)
Length: 430
Type: three_prime_UTR


>Vigan.03G030800.01
GGAAGAACAC ATGAAGCTGA AGCAGAGTGT GTCACTGTTC CCCAATTTTC GTGTGTTTAG TGTGAAGCAG TAGGAAACAG
CAGTACACTA TGCCTTCAGC TCAAGATCCA TTCTATGTTG TGAAGGAGGA GATTCAAGAA TCTATTGATA AGCTGCAATC
TACTTTTCGC CAATGGGAAA AAGCTGCTGA TGATGGCGAG CGATCCAATC TTTCAAAGGA AGTTCTTACT AGCTGTGAAA
GCATTGATTG GCAGGTAGAT GAATTGGACA AAGCAATTTC TGTGGCCTCT AGAGATCCTT CTTTGTATGG CATTGATGAA
GTGGAGCTTG AGAACAGGAG GAGGTGGACC AGTGATGCTC GTAGCCAGGT GAGCACAGCA AAGAAAGCAA TGGAAGCGGG
AACACGCTCA AATATAACAA ACAATGCTAA TCTAAATGGG ATGCGCAGGG AATTAATGAG GCTTACTAAT TCTCATCAAT
CTGCGTCTGA CCCATATGCT ACCCAGGATA ACGACGATCT CATAGAATCA GAATCGGACA GGCAGATGCT TCTTATAAAG
AGACAGGATG AGGAGTTGGA CGAACTTAGT ATAAGTGTAC AGAGAATTGG AGATGTTGGA CTTACTATAC ATGATGAGCT
CGTTGCACAG GAGAAGATTG TTGATGAACT GGGTAATGAG ATGGACAGTA CATCCAATCG TCTAGATTTT GTCCAAAAAA
AAGTAGCAAT GGTCATGAAG AAGGCTAGTG CAAAGGGCCA GATCATGATG ATCCTGGGTT TGCTGGCTCT GTTCATGTTC
CTCTTTATCT TGGTATTCTT CACCTAGTCA TTGAGACAAA AGTTTTCGTG TTTGTACATG AAAAAGGATC TAAAGCTTTT
GTCAAGATAC CAGATTATTG GGAAATCCAT TATGCTTAGA AATCAAGTGG AAGCCTCTTT GGTTTGTTGA AGGCAGTGAA
ATTTTTTATT ATGATGAAAA GGGAAGCAAT GTGCTTGAAA ATATTACAAG AAGATTTGGT TTCTGGCAGT ATAGACTGCT
AATGTGATTT AAATGAGTTG TATTCGTTTT CAAGATTGCA ATGTTTGATG TTCTTTTTTT GAATTCATAC ATGTACCAAG
ATAGATAGCT TATGACAGAT TTTTATACAA ATTAACCCAT TATTTACTTG CTCACAGGGA CAAGAATGAC GAGTTGCTGT
TTTTATCACG TTACAAACTG AAATGATGAC AAAAAAAAGG CTGTTGTGTT ATCTAAA

>Vigan.03G030800.01
ATGCCTTCAG CTCAAGATCC ATTCTATGTT GTGAAGGAGG AGATTCAAGA ATCTATTGAT AAGCTGCAAT CTACTTTTCG
CCAATGGGAA AAAGCTGCTG ATGATGGCGA GCGATCCAAT CTTTCAAAGG AAGTTCTTAC TAGCTGTGAA AGCATTGATT
GGCAGGTAGA TGAATTGGAC AAAGCAATTT CTGTGGCCTC TAGAGATCCT TCTTTGTATG GCATTGATGA AGTGGAGCTT
GAGAACAGGA GGAGGTGGAC CAGTGATGCT CGTAGCCAGG TGAGCACAGC AAAGAAAGCA ATGGAAGCGG GAACACGCTC
AAATATAACA AACAATGCTA ATCTAAATGG GATGCGCAGG GAATTAATGA GGCTTACTAA TTCTCATCAA TCTGCGTCTG
ACCCATATGC TACCCAGGAT AACGACGATC TCATAGAATC AGAATCGGAC AGGCAGATGC TTCTTATAAA GAGACAGGAT
GAGGAGTTGG ACGAACTTAG TATAAGTGTA CAGAGAATTG GAGATGTTGG ACTTACTATA CATGATGAGC TCGTTGCACA
GGAGAAGATT GTTGATGAAC TGGGTAATGA GATGGACAGT ACATCCAATC GTCTAGATTT TGTCCAAAAA AAAGTAGCAA
TGGTCATGAA GAAGGCTAGT GCAAAGGGCC AGATCATGAT GATCCTGGGT TTGCTGGCTC TGTTCATGTT CCTCTTTATC
TTGGTATTCT TCACCTAG

>Vigan.03G030800.01
MPSAQDPFYV VKEEIQESID KLQSTFRQWE KAADDGERSN LSKEVLTSCE SIDWQVDELD KAISVASRDP SLYGIDEVEL
ENRRRWTSDA RSQVSTAKKA MEAGTRSNIT NNANLNGMRR ELMRLTNSHQ SASDPYATQD NDDLIESESD RQMLLIKRQD
EELDELSISV QRIGDVGLTI HDELVAQEKI VDELGNEMDS TSNRLDFVQK KVAMVMKKAS AKGQIMMILG LLALFMFLFI
LVFFT*