VIGGS:GBrowse

Vigan.03G032800.01

Basic Information:

Name:	Vigan.03G032800.01 Multiple alignment Variant Information
Position:	Chr03:2533828..2536471 (+ strand)
Length:	2644

Functional Information:

Description:	Similar to cytochrome P450 716B1-like. [XP_004491368.1, Cicer arietinum]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
	Molecular Function: heme binding (GO:0020037)
InterPro:	Cytochrome P450 (IPR001128)
	Cytochrome P450, E-class, group I (IPR002401)
	Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:17.51,4.17,4.49,6.24,7.72,4.62,26.03,3.30

Automatic updates:

Name:	NM_001255909 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max cytochrome P450 family protein (LOC100790001), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:2533828..2534012 (+ strand)
Length:	185
Type:	five_prime_UTR

Position:	Chr03:2534013..2534504 (+ strand)
Length:	492
Type:	CDS

Position:	Chr03:2534913..2535354 (+ strand)
Length:	442
Type:	CDS

Position:	Chr03:2535672..2535859 (+ strand)
Length:	188
Type:	CDS

Position:	Chr03:2535943..2536245 (+ strand)
Length:	303
Type:	CDS

Position:	Chr03:2536246..2536471 (+ strand)
Length:	226
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G032800.01
TGAAAACATT CTTATATCAG ATTGCAGTTT TGATAATGTA CAAAGCCAGC TTTATCAAAG AGTTTCATTT GTACCCTTCA
ATTAGAGATA AAAGCAAATG ATCAAAATCT CTCACAAAAG TCAAACATAA ATAGTCTCAC AAGAGCATTG CTACCTTGAG
AATCTGAAAA AGGAAAACTT CAACCATGAA TCTTCTTTTG TTGGGTTTTC TCTTCTTCAT CCCAATCCTT CTTCTGCTGA
GAAGAGGAAG AAACCCCTCT AAAAGGGTTC CTCCTGGTTC ACTTGGAATA CCTATTATTG GCCAAAGTCT TGGCCTTCTT
CGAGCTATGC GTGCCAACAC CGCAGAAAAG TGGGTTCAAG AAAGAATCAG CAAGTATGGT CCCATTTCAA AGCTAAGCCT
ATTCGGAAAA CCAACAGTGT TAATCTATGG ACAGGCTGCA AATAAGTTTA TATTCTCTAG TGGCGGCAAC GCAATTGCTA
ACCAGCAAAC ACAATCCATC AAAATGATCC TAGGTGACCG GACCTTGCTG GAACTGAGTG GTGAAGATCA CAGCCGAGTC
AGAGGTGCAC TTGTTTCATT TTTGAAGCCA GAGTCGTTGA AGAGATATGT GGGAAAAATG GATGAAGAAG TCAGGAATCA
CCTTCAGATG CATTGGCAGG GGAAACAGCA AGTCAAGGTA TTGCCTCTGA TGAAGACTCT CACGTTCAAT ATAATTTGCT
CTCTTTTGTT TGGTCTTGAG CGTGGAAAAC AGAGAGATCA ATACCTGGAT TCCTTCCAAG AGATGATAGA AGGAATGTGG
TCAGTCCCAA TTAACGTGCC CTTCACACGT TACAATCGTA GCCTTAGAGC AAGTGCAAGA ATCCAGACCA TGCTGAAGGA
GACTGTGCAG AAGAAGAGGA TTGAACTCGA GCAAAATGCA GCATCTGCAC GCCAAGACTT GATTAGTTGC TTGTTAGGCA
CGGTTGATGA AGATGGCAAA CAAGTTACGA CTGAGAAGGA AATCATTGAC AACATTAAGC TTGTCATGGT TGCTGGACAC
GACACTTCAT CTGTTCTAAT CACTTTCATC ATCCGACTCT TAGCCAACGA ACCTGCTATT TATGCAGCAG TTCTTCAAGA
ACAGGAAGAG ATAGCAAAAG GCAAGCCCTC TGGAGAGGCA CTCACATGGG AAGACCTTTC AAAGATGAAG TACACATGGA
GAGTAGCAAT GGAAACTCTT AGAATGTTTC CTCCTATTTT TGGTGGCTTC AGAAAGGCTG AAACAGATAT TGAATACGAT
GGATACCTCA TACCCAAAGG ATGGCAGATT TTCTGGGTCA CAGCAATGAC CCACATGGAT AGCAGCATTT TCACAGAACC
ATTGAAGTTT GAACCTAGTA GATTTGAAAA CCAAGCATCT GTACCACCCT ACTGCTTCAT TCCATTTGGT GGGGGAGCAA
GAATATGTCC AGGGTATGAG TTTTCCAGGC TTGAAACTCT AGTTGCAATT CATTACCTAG TGACCCGATT CAGTTGGAAA
CTATGTTCAG ACAATTTCTT CAATAGGGAT CCAATGCCAG TACCATCTCA AGGGCTACTG ATTCAAATTT GGCCAAGGAG
ACTTTCTTAA TGGTCATTTC AGTAACAGCT GGTCTTATAA TACGATGTAC CAAAAATAAG TCAATGTTAA TAATCAGGGA
GTAATTATTA CCTTATTTTG TATTCACACT TGAAAATAAC TGAGTTACAA TCTTACAGGA ACAAAAAGAA GAATAAGCAA
GCACTTAAAC TACACTATTT TAAATCATTT CGCATGTATC TCCTAATTTG CATATTCCAT CATTTGACAG AATTGG

[show][hide][copy]CDS

>Vigan.03G032800.01
ATGAATCTTC TTTTGTTGGG TTTTCTCTTC TTCATCCCAA TCCTTCTTCT GCTGAGAAGA GGAAGAAACC CCTCTAAAAG
GGTTCCTCCT GGTTCACTTG GAATACCTAT TATTGGCCAA AGTCTTGGCC TTCTTCGAGC TATGCGTGCC AACACCGCAG
AAAAGTGGGT TCAAGAAAGA ATCAGCAAGT ATGGTCCCAT TTCAAAGCTA AGCCTATTCG GAAAACCAAC AGTGTTAATC
TATGGACAGG CTGCAAATAA GTTTATATTC TCTAGTGGCG GCAACGCAAT TGCTAACCAG CAAACACAAT CCATCAAAAT
GATCCTAGGT GACCGGACCT TGCTGGAACT GAGTGGTGAA GATCACAGCC GAGTCAGAGG TGCACTTGTT TCATTTTTGA
AGCCAGAGTC GTTGAAGAGA TATGTGGGAA AAATGGATGA AGAAGTCAGG AATCACCTTC AGATGCATTG GCAGGGGAAA
CAGCAAGTCA AGGTATTGCC TCTGATGAAG ACTCTCACGT TCAATATAAT TTGCTCTCTT TTGTTTGGTC TTGAGCGTGG
AAAACAGAGA GATCAATACC TGGATTCCTT CCAAGAGATG ATAGAAGGAA TGTGGTCAGT CCCAATTAAC GTGCCCTTCA
CACGTTACAA TCGTAGCCTT AGAGCAAGTG CAAGAATCCA GACCATGCTG AAGGAGACTG TGCAGAAGAA GAGGATTGAA
CTCGAGCAAA ATGCAGCATC TGCACGCCAA GACTTGATTA GTTGCTTGTT AGGCACGGTT GATGAAGATG GCAAACAAGT
TACGACTGAG AAGGAAATCA TTGACAACAT TAAGCTTGTC ATGGTTGCTG GACACGACAC TTCATCTGTT CTAATCACTT
TCATCATCCG ACTCTTAGCC AACGAACCTG CTATTTATGC AGCAGTTCTT CAAGAACAGG AAGAGATAGC AAAAGGCAAG
CCCTCTGGAG AGGCACTCAC ATGGGAAGAC CTTTCAAAGA TGAAGTACAC ATGGAGAGTA GCAATGGAAA CTCTTAGAAT
GTTTCCTCCT ATTTTTGGTG GCTTCAGAAA GGCTGAAACA GATATTGAAT ACGATGGATA CCTCATACCC AAAGGATGGC
AGATTTTCTG GGTCACAGCA ATGACCCACA TGGATAGCAG CATTTTCACA GAACCATTGA AGTTTGAACC TAGTAGATTT
GAAAACCAAG CATCTGTACC ACCCTACTGC TTCATTCCAT TTGGTGGGGG AGCAAGAATA TGTCCAGGGT ATGAGTTTTC
CAGGCTTGAA ACTCTAGTTG CAATTCATTA CCTAGTGACC CGATTCAGTT GGAAACTATG TTCAGACAAT TTCTTCAATA
GGGATCCAAT GCCAGTACCA TCTCAAGGGC TACTGATTCA AATTTGGCCA AGGAGACTTT CTTAA

[show][hide][copy]PROTEIN

>Vigan.03G032800.01
MNLLLLGFLF FIPILLLLRR GRNPSKRVPP GSLGIPIIGQ SLGLLRAMRA NTAEKWVQER ISKYGPISKL SLFGKPTVLI
YGQAANKFIF SSGGNAIANQ QTQSIKMILG DRTLLELSGE DHSRVRGALV SFLKPESLKR YVGKMDEEVR NHLQMHWQGK
QQVKVLPLMK TLTFNIICSL LFGLERGKQR DQYLDSFQEM IEGMWSVPIN VPFTRYNRSL RASARIQTML KETVQKKRIE
LEQNAASARQ DLISCLLGTV DEDGKQVTTE KEIIDNIKLV MVAGHDTSSV LITFIIRLLA NEPAIYAAVL QEQEEIAKGK
PSGEALTWED LSKMKYTWRV AMETLRMFPP IFGGFRKAET DIEYDGYLIP KGWQIFWVTA MTHMDSSIFT EPLKFEPSRF
ENQASVPPYC FIPFGGGARI CPGYEFSRLE TLVAIHYLVT RFSWKLCSDN FFNRDPMPVP SQGLLIQIWP RRLS*