GBrowse Details

Vigan.03G033600.01

Basic Information:
Name: Vigan.03G033600.01
Multiple alignment
Variant Information
Position: Chr03:2573820..2576703 (- strand)
Length: 2884
Functional Information:
Description: Similar to Chloroplast lipocalin. [Q38JB2, Glycine max]
InterPro: Lipocalin/cytosolic fatty-acid binding domain (IPR000566)
Calycin-like (IPR011038)
Calycin (IPR012674)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.47,15.13,17.55,34.64,6.82,15.36,5.79,10.69
Arabidopsis thaliana homolog: AT3G47860.1
Automatic updates:
Name: NM_001289318 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100787880 (CHL), mRNA.
PubMed ID: 16306142 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:2573820..2574170 (- strand)
Length: 351
Type: three_prime_UTR
Position: Chr03:2574171..2574449 (- strand)
Length: 279
Type: CDS
Position: Chr03:2574675..2574965 (- strand)
Length: 291
Type: CDS
Position: Chr03:2575266..2575508 (- strand)
Length: 243
Type: CDS
Position: Chr03:2575862..2575988 (- strand)
Length: 127
Type: CDS
Position: Chr03:2576543..2576601 (- strand)
Length: 59
Type: CDS
Position: Chr03:2576602..2576703 (- strand)
Length: 102
Type: five_prime_UTR


>Vigan.03G033600.01
TTTCAAGAGG ATCTTTTGTC ACAGAAACCA AACCTTGGAC ATTAGAAAGA AAGTTCAGAA TGGGGCAACT TTGGACAAGA
CAACTAGTGA AAACACAAAG ACATGGTAGA GGTTCTTCTA CGAGCATCAC CTCCTCCACC TCACTCTTCT TCTTATCCCA
GACAATGCAG GACAGTTTCA GGAAGAACAT CGGTAAGGTG CTCGTTGGAA GTCCCAAGTA AGGTTCTGAC CAAACATGTC
TTATCTGGGC TTGCTGCTTC TTTGATCTTT GTTTCTCCAG CAAATCAGTC TGTTGCAGCA GATCTATCTC GTGCTCAAAA
TAATATATGT CAAATTGCCA GTGCCAGAGA TGCTGCACTT ACTTCACCAT TTGAGAATGG ATCTGATGAA AAGGGTGCAA
ATCTAATGAT GATGAGAGGT ATGACAGCCA AGGATTTTGA CCCTGTAAGA TATGCTGGAA GATGGTTTGA AGTTGCTTCA
CTTAAACGTG GATTTGCTGG ACAAGGCCAA GAAGATTGTC ACTGCACTCA GGGTGTATAT ACATTTGATA GGGAAGTACC
ATCTATTCAA GTTGACACCT TTTGTGTTCA CGGAAGCCCA AATGGGTTTA TAACCGGAAT TAGGGGAAAG GTTCAATGTG
TTTCGGAAGA AGATTTGGAT AAAAATGAGA CACAGCTAGA GAAGCAGGAG ATGATCAAAG AAAAATGCTA TCTCCGCTTT
CCTACATTGC CATTCATTCC TAAGGAACCT TATGATGTGA TTGATACTGA TTATGACAAT TTTTCTCTTG TTTCAGGAGC
TAAGGATAAA AGTTTTATCC AGATATATTC AAGGACACCT AACCCTGGAC CTGAATTTAT TGAGAAGTAC AAGTCGTACC
TTGCAAAGTT TGGATATGAT CCAAGCAAAA TTAAAGATAC ACCACAGGAT TGTGAAGTCA TGTCCAATAG TCAGCTGGCT
GCTATGATGT CTATGTCTGG AATGCAGCAG GCACTTACAA ACCAATTTCC TGATCTAGGA CTGAACTCCC CTATTGAGTT
TAATCCTTTC ACTAGTGTAT TTGACACTTT GAAGAAGCTT GTTGAGCTTT ACTTTAAGTA GTAACTATGT TTTGTTTTAA
GATATTTACT CCTGTAAACA ATAGCTAGCT GCTATCATTG ATAGCAACCT ATGTGTAACA TGTAAAGTAT GACCTACCTG
TATCTGCTGT AATCCTCTGG TATATCGCGT TTTATCTGTC TATGGTGTTT TAACAGAGTT TTGTATGCAA ATCACCATGG
TGTGGTAGGA TTTTACAGCC TCCATACATT TATTAGAATG TAAATATGTT AACCATCTCA CACGTCCGAG AAGAAAATGT
TCTGTAATAG AATCATAACA GAAAAAAAGG AAAGATGCTG TCTTTTAGCA TTTGACTATA GGCTAAGGTT TTGACTGTGT
GCTGGTTAAT AT

>Vigan.03G033600.01
ATGGTAGAGG TTCTTCTACG AGCATCACCT CCTCCACCTC ACTCTTCTTC TTATCCCAGA CAATGCAGGA CAGTTTCAGG
AAGAACATCG GTAAGGTGCT CGTTGGAAGT CCCAAGTAAG GTTCTGACCA AACATGTCTT ATCTGGGCTT GCTGCTTCTT
TGATCTTTGT TTCTCCAGCA AATCAGTCTG TTGCAGCAGA TCTATCTCGT GCTCAAAATA ATATATGTCA AATTGCCAGT
GCCAGAGATG CTGCACTTAC TTCACCATTT GAGAATGGAT CTGATGAAAA GGGTGCAAAT CTAATGATGA TGAGAGGTAT
GACAGCCAAG GATTTTGACC CTGTAAGATA TGCTGGAAGA TGGTTTGAAG TTGCTTCACT TAAACGTGGA TTTGCTGGAC
AAGGCCAAGA AGATTGTCAC TGCACTCAGG GTGTATATAC ATTTGATAGG GAAGTACCAT CTATTCAAGT TGACACCTTT
TGTGTTCACG GAAGCCCAAA TGGGTTTATA ACCGGAATTA GGGGAAAGGT TCAATGTGTT TCGGAAGAAG ATTTGGATAA
AAATGAGACA CAGCTAGAGA AGCAGGAGAT GATCAAAGAA AAATGCTATC TCCGCTTTCC TACATTGCCA TTCATTCCTA
AGGAACCTTA TGATGTGATT GATACTGATT ATGACAATTT TTCTCTTGTT TCAGGAGCTA AGGATAAAAG TTTTATCCAG
ATATATTCAA GGACACCTAA CCCTGGACCT GAATTTATTG AGAAGTACAA GTCGTACCTT GCAAAGTTTG GATATGATCC
AAGCAAAATT AAAGATACAC CACAGGATTG TGAAGTCATG TCCAATAGTC AGCTGGCTGC TATGATGTCT ATGTCTGGAA
TGCAGCAGGC ACTTACAAAC CAATTTCCTG ATCTAGGACT GAACTCCCCT ATTGAGTTTA ATCCTTTCAC TAGTGTATTT
GACACTTTGA AGAAGCTTGT TGAGCTTTAC TTTAAGTAG

>Vigan.03G033600.01
MVEVLLRASP PPPHSSSYPR QCRTVSGRTS VRCSLEVPSK VLTKHVLSGL AASLIFVSPA NQSVAADLSR AQNNICQIAS
ARDAALTSPF ENGSDEKGAN LMMMRGMTAK DFDPVRYAGR WFEVASLKRG FAGQGQEDCH CTQGVYTFDR EVPSIQVDTF
CVHGSPNGFI TGIRGKVQCV SEEDLDKNET QLEKQEMIKE KCYLRFPTLP FIPKEPYDVI DTDYDNFSLV SGAKDKSFIQ
IYSRTPNPGP EFIEKYKSYL AKFGYDPSKI KDTPQDCEVM SNSQLAAMMS MSGMQQALTN QFPDLGLNSP IEFNPFTSVF
DTLKKLVELY FK*