GBrowse Details

Vigan.03G034500.01

Basic Information:
Name: Vigan.03G034500.01
Multiple alignment
Variant Information
Position: Chr03:2655102..2659397 (- strand)
Length: 4296
Functional Information:
Description: Similar to hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like. [XP_003545077.2, Glycine max]
GO: Biological Process: ubiquinone biosynthetic process (GO:0006744)
Molecular Function: 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity (GO:0008425)
InterPro: Ubiquinone biosynthesis O-methyltransferase (IPR010233)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.88,8.53,4.67,5.14,5.30,10.74,3.60,3.80
Arabidopsis thaliana homolog: AT2G30920.1
Automatic updates:
Name: NM_001254325 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like (LOC100783802), mRNA; nuclear gene for mitochondrial product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:2655102..2656346 (- strand)
Length: 1245
Type: three_prime_UTR
Position: Chr03:2656347..2656556 (- strand)
Length: 210
Type: CDS
Position: Chr03:2656662..2656811 (- strand)
Length: 150
Type: CDS
Position: Chr03:2656974..2657023 (- strand)
Length: 50
Type: CDS
Position: Chr03:2657679..2657727 (- strand)
Length: 49
Type: CDS
Position: Chr03:2657859..2657936 (- strand)
Length: 78
Type: CDS
Position: Chr03:2658155..2658233 (- strand)
Length: 79
Type: CDS
Position: Chr03:2658693..2658782 (- strand)
Length: 90
Type: CDS
Position: Chr03:2658992..2659203 (- strand)
Length: 212
Type: CDS
Position: Chr03:2659204..2659397 (- strand)
Length: 194
Type: five_prime_UTR


>Vigan.03G034500.01
AATAAGAACT ACAAAAACAC ATTATATCAC GAGACTAAAA ATTTAATTAA GTCAATAATT TAAAAATTAA TAAAACAGTA
ACCCGATTTT CACAATCGGG TCAAAACAGG AGCCCCGACA AGTCCACAGC CGCGGATCTA TCCAGCTGAA GGGTTCAGGA
AAGAGAGGAA GATTTTGAGC ACGGGATCAT TGCAATGGCC ATGGCTGCTA ACCATCTCCG AAACTCGACT CGCAGCTCTC
TCCACCGCAT TCTCCATCAC CGTTTTCAAC CTCTCCTCAA TGCTGCTAGG TTTTTCTCCG ATGCTGCTTC TTCAATGCCT
CAACCGCAAC CTAATCAGCA ATCTCCGCCT CCTTCGTCCT TGAAGGATTA TGAACTCGCC AAGTTCGCTG CAATTGCTGA
TTCCTGGTGG GATTCTGAAG GTCCCTTTAA GCCATTGCAT TTGATGAATC CTACGAGACT TGCTTTTATC CGTTCTGCAT
TATGTCGTCA TTTTAAGAAG GACCCTTATA GTGCTAAACC TCTTGAAGGA CTTAAAATTG TTGATGTTGG ATGTGGAGGT
GGAATTCTTT CTGAGCCACT AGCTCGATTG GGAGCTAATG TGACGGGTGT TGATGCTGTT GAGAAGAATA TCAAGATTGC
TCAACTTCAT GCTGGTTTGG ATCCAGTAAC TTCAACTATT GAATTTTGTT GCACAACGGC CGAGAAACTA GTTGAAGAAG
GAAGAAAATT CGATGCCGTT ATGGCCTTGG AGGTGATTGA GCACGTGGCA AATCCTGCAG AGTTCTGCAA ATCTCTTGCA
GCACTAACAG TTCCTGACGG CGCCACTGTG ATATCGACCA TTAATCGTTC TATGCGAGCC TACGCAACTG CCATTGTTGC
TGCAGAATAC ATTCTCCGCT GGCTTCCGAG AGGCACTCAT CAATGGTCCA GTTTTCTGAC GCCAGAGGAA CTCGTCCTCA
TCCTGCAACG CGCCGGTATC AATGTACGTA CACGAAAGGA ACTCATAATT CATAAACAAT TTCATTTGCC AGGTTTTAGT
CATCGCCTAC TTCATTTGTT GCATTGGACA TACAGGTGGA GGAGATGGCC GGATTTGTGT ACAACCCGGT GACAGGACGG
TGGTCTTTAT CAGACGATAT CAGCGTAAAT TTCATCGCCT TCGGCACCAA ATCAAACAAC ACCGAATAGC AAGATATATA
GATAAAATAG CATTACTATT AGTACTGTTA TATTATTATA ATTGAAATTG TTTTTGAATG GCGAATAATA ATATCCGTGA
AATTGGAACA ATCAGGGAGT GGAGGGAGAG AGTTTCCTGA GAGTGATAGA GGTGCGTTTG GATTGAGTCA ACTGTCGACC
CTGCCATATC TGAAACTCCG GTGAGCGATT AATTTCGTGT TTCCAATGGT AGCGTGCTTC TCCGGACATG AGGATCAATG
AGCCAGGGGT GAGGAGAACG GGAACGGAGA GGGAGGCGTT GGTGAAGTGC ATGACGCAGT CGGACTCGAG GGAGAGGATG
GCGATGCCGT CGTCGAAGCG GAGGAGGTCG ACGTGGGCGC AGATGCCTTC GCCGGGCTGG TAGACGTTGG CGATCATCTG
GTCAAAGAGG GGTTCTCTGT GGAGGATGTG GGGCGGGAAG GGGGGTGGGT TATGGGCCTG GAGGCGGATG GAGCGGCGAA
TGGAGTGGGC CAGAGGAGGG GCCCAAGAAG GGAGGTGTTG GAGGCCGAAG CGCATGGCCT GGTTGATGGA GGGAGAGGGG
AACCAGTTTT GGGATTGGAT GGATGCGAGT ATACGGGATT GGTGGCGTGG AGAGAGGAAA TTGGGACACA GCCATAGACC
CTTCACTTCT GAGATTGACT CCCACTCCCA CTCACCTTCC CTTTCGCCGT CGCTGTAGCC GTCACTGCCA TCAGATTCCT
CGGATGAAGA CCCGAAGATT TGTTCCAACA CCGCCTTCTC CTCCTCCTCC TCTTCCCTCA TCTTTCTTTC TTCCACTTCT
CTTCTCTTCT CTTCCCAGTT CCTGCAGATT AAGTCTTCTT CCCTTCCTCT TCTTCAATTC ATGCATGCTC GATTTTTACC
TTCCTTGCTG CTTTATATCA AATGATGGAA TCAGCTATAA ATTTGATCCT CCATTCTCCT CACTCACCTT TTTTTTTTCT
TCGGCGCACA CCTTGAAAGT ACAACATATT GCTTTGGCGG GCTGGCCCAA CACATTATTT TTTGTCTGAA CCAAAATATT
AGATGAAAAT TTCTGCACCC CCATAATTAC TAACTACATT TTCATAGTTT TCAAAATAAC CATTCTACCT GTCTTCTGGA
TTATTTTTTT CTAGAACTTT TGCAAGATGA TTTTCAG

>Vigan.03G034500.01
ATGGCCATGG CTGCTAACCA TCTCCGAAAC TCGACTCGCA GCTCTCTCCA CCGCATTCTC CATCACCGTT TTCAACCTCT
CCTCAATGCT GCTAGGTTTT TCTCCGATGC TGCTTCTTCA ATGCCTCAAC CGCAACCTAA TCAGCAATCT CCGCCTCCTT
CGTCCTTGAA GGATTATGAA CTCGCCAAGT TCGCTGCAAT TGCTGATTCC TGGTGGGATT CTGAAGGTCC CTTTAAGCCA
TTGCATTTGA TGAATCCTAC GAGACTTGCT TTTATCCGTT CTGCATTATG TCGTCATTTT AAGAAGGACC CTTATAGTGC
TAAACCTCTT GAAGGACTTA AAATTGTTGA TGTTGGATGT GGAGGTGGAA TTCTTTCTGA GCCACTAGCT CGATTGGGAG
CTAATGTGAC GGGTGTTGAT GCTGTTGAGA AGAATATCAA GATTGCTCAA CTTCATGCTG GTTTGGATCC AGTAACTTCA
ACTATTGAAT TTTGTTGCAC AACGGCCGAG AAACTAGTTG AAGAAGGAAG AAAATTCGAT GCCGTTATGG CCTTGGAGGT
GATTGAGCAC GTGGCAAATC CTGCAGAGTT CTGCAAATCT CTTGCAGCAC TAACAGTTCC TGACGGCGCC ACTGTGATAT
CGACCATTAA TCGTTCTATG CGAGCCTACG CAACTGCCAT TGTTGCTGCA GAATACATTC TCCGCTGGCT TCCGAGAGGC
ACTCATCAAT GGTCCAGTTT TCTGACGCCA GAGGAACTCG TCCTCATCCT GCAACGCGCC GGTATCAATG TACGTACACG
AAAGGAACTC ATAATTCATA AACAATTTCA TTTGCCAGGT TTTAGTCATC GCCTACTTCA TTTGTTGCAT TGGACATACA
GGTGGAGGAG ATGGCCGGAT TTGTGTACAA CCCGGTGA

>Vigan.03G034500.01
MAMAANHLRN STRSSLHRIL HHRFQPLLNA ARFFSDAASS MPQPQPNQQS PPPSSLKDYE LAKFAAIADS WWDSEGPFKP
LHLMNPTRLA FIRSALCRHF KKDPYSAKPL EGLKIVDVGC GGGILSEPLA RLGANVTGVD AVEKNIKIAQ LHAGLDPVTS
TIEFCCTTAE KLVEEGRKFD AVMALEVIEH VANPAEFCKS LAALTVPDGA TVISTINRSM RAYATAIVAA EYILRWLPRG
THQWSSFLTP EELVLILQRA GINVRTRKEL IIHKQFHLPG FSHRLLHLLH WTYRWRRWPD LCTTR*