GBrowse Details

Vigan.03G035100.01

Basic Information:
Name: Vigan.03G035100.01
Multiple alignment
Variant Information
Position: Chr03:2708502..2714730 (+ strand)
Length: 6229
Functional Information:
Description: Similar to Uncharacterized protein. [I1M6W4, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.00,9.63,0.04,0.00,45.13,0.01,0.74
Automatic updates:
Name: BT093859 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-14E22 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:2708502..2709312 (+ strand)
Length: 811
Type: five_prime_UTR
Position: Chr03:2709313..2709542 (+ strand)
Length: 230
Type: CDS
Position: Chr03:2711516..2711597 (+ strand)
Length: 82
Type: CDS
Position: Chr03:2712339..2712400 (+ strand)
Length: 62
Type: CDS
Position: Chr03:2712481..2712580 (+ strand)
Length: 100
Type: CDS
Position: Chr03:2712753..2712794 (+ strand)
Length: 42
Type: CDS
Position: Chr03:2713082..2713123 (+ strand)
Length: 42
Type: CDS
Position: Chr03:2713221..2713384 (+ strand)
Length: 164
Type: CDS
Position: Chr03:2714559..2714562 (+ strand)
Length: 4
Type: CDS
Position: Chr03:2714563..2714730 (+ strand)
Length: 168
Type: three_prime_UTR


>Vigan.03G035100.01
TGAGAAAAGA GGTTTGAAGT AGAAGAGAAA GAGAGTGGAT TCTATGTGGA TAAAATGCCA AAACTCAAAA TCCAAGAAGC
AACCTGAAGC CATGCCTAAA AAATCAAAGG GTTGTAAGTT TTTGCGTGCA AACTTACGTT GACGTCCCTC TCATAGGCCA
TGAATAATGA AAGCCCACCT CATACAAAGT CACTTTCAAA AAGACACTTT CATTGTCCCC CTTCACCTTT TTCCCATACA
TACATCAACA GATATGAAAG CTTCATACAT TGAACATCAG ACTTAACAGC TGAATCCCAG GCCAAACCCT TCTCTTCTCA
ACCTCCTTTT TCTTTTATTC TCCAAACATC ACACATATCC CTTCACCAAA TTACTATTTT CAGTGCTCTC AATCAGTTCG
ACCCTCTATT TTCACTCCAT AAATACCTTT CTCCTAGGCC AACCCACTTC CATATTTTGC ATCCTTTTTC TCTTCACTCT
TCTACCATAA ATACTGCTCT TCTCATTGCA TAGGTACAAC ACCTACCTAT CATCTACTTA CAAGCACACC CTTTCTTTCT
CTCCATTCTG TCTTTCATTA TTATATAATA TGTTCGTCTT AGGGACAACA AGCTTAATAT CATAGTGTGT ATATATGTTC
AGTACAAATC ATCAAGCTTA ATGACCATTT CTTTCGAAGC TTCTTTGGTT ATCCTAAAAG ATTTCATCCA TTCTTGAAGT
GACCCAAAGG GAAAAATATC TACTTTTGGT GTTTTATGTT TTCTTTTCTG ACTATATTTT GTAGTGGGTA GGTTGTTGCA
GCGAGAGAGA TATGGAGTTT CCGAACGAAG CAATATCAGA AGGGTGTTCT CAGAAGAAAA GTGGAAGAGG GAAAATAGAG
ATCAAGCGGA TCGAGAACAC CACCAATCGG CAAGTTACCT TCTGCAAACG TCGCAACGGG TTGCTCAAGA AGGCTTATGA
ATTGTCTGTT CTCTGTGATG CCGAAGTTGC TCTTGTTGTC TTCTCAAGCC GTGGACGCCT TTATGAGTAT GCAAACAACA
GTGTTAGAGG AACTATCGAT AGGTACAAGA AAGCATGCGC TGCTTCCTCA AATGCAGAAT CTGTCTCTGA AGCTAATACA
CAGTTTTATC AGCAAGAATC ATCCAAGTTA AAAAGACAAA TCAGAGACAT TCAGAATCTA AACAGGCACA TCCTTGGTGA
AGCTCTTAGT TCTCTAAGTC TGAAGGAATT AAAGAATCTT GAGAGTAGAT TGGAGAAAGG TTTGAGCAGA GTCAGATCCA
GAAAGCATGA GACATTGTTT GCGGATATCG AATTCATGCA AAAGCGGGAA ATAGAGCTGC AAAACCACAA TAATTTTCTG
CGAGCTAAGA TAGCTGAACA CGATAGAGAA GAAGAACAAC AGCAACATAT GACAGGAAAT GTGTGCGAGT CCTTACCAGC
TTCACAGTCA TATGACAGGA ATTTCTTCCC TGTAAACCTC ATAGATTCCA GTCATCAATA CTCACGTCAA GACCACACTG
CTCTTCAACT TGTCTGATAA CCCTATTTAA AATTATGGCA TAGCCTTTCT ATGATTTGGA AGTGGTGTGG GATACATATC
CCTAAGTCTC CTGAAGGGTG CCCTTCGAAT TTCCTCTGCT AAACTTCTTC CCATGAAAAC TTTAAGAAAT TAAAGCAAGA
ATCAGCATTT GTACTAATAC ATCAT

>Vigan.03G035100.01
ATGGAGTTTC CGAACGAAGC AATATCAGAA GGGTGTTCTC AGAAGAAAAG TGGAAGAGGG AAAATAGAGA TCAAGCGGAT
CGAGAACACC ACCAATCGGC AAGTTACCTT CTGCAAACGT CGCAACGGGT TGCTCAAGAA GGCTTATGAA TTGTCTGTTC
TCTGTGATGC CGAAGTTGCT CTTGTTGTCT TCTCAAGCCG TGGACGCCTT TATGAGTATG CAAACAACAG TGTTAGAGGA
ACTATCGATA GGTACAAGAA AGCATGCGCT GCTTCCTCAA ATGCAGAATC TGTCTCTGAA GCTAATACAC AGTTTTATCA
GCAAGAATCA TCCAAGTTAA AAAGACAAAT CAGAGACATT CAGAATCTAA ACAGGCACAT CCTTGGTGAA GCTCTTAGTT
CTCTAAGTCT GAAGGAATTA AAGAATCTTG AGAGTAGATT GGAGAAAGGT TTGAGCAGAG TCAGATCCAG AAAGCATGAG
ACATTGTTTG CGGATATCGA ATTCATGCAA AAGCGGGAAA TAGAGCTGCA AAACCACAAT AATTTTCTGC GAGCTAAGAT
AGCTGAACAC GATAGAGAAG AAGAACAACA GCAACATATG ACAGGAAATG TGTGCGAGTC CTTACCAGCT TCACAGTCAT
ATGACAGGAA TTTCTTCCCT GTAAACCTCA TAGATTCCAG TCATCAATAC TCACGTCAAG ACCACACTGC TCTTCAACTT
GTCTGA

>Vigan.03G035100.01
MEFPNEAISE GCSQKKSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA LVVFSSRGRL YEYANNSVRG
TIDRYKKACA ASSNAESVSE ANTQFYQQES SKLKRQIRDI QNLNRHILGE ALSSLSLKEL KNLESRLEKG LSRVRSRKHE
TLFADIEFMQ KREIELQNHN NFLRAKIAEH DREEEQQQHM TGNVCESLPA SQSYDRNFFP VNLIDSSHQY SRQDHTALQL
V*