GBrowse Details

Vigan.03G045100.01

Basic Information:
Name: Vigan.03G045100.01
Multiple alignment
Variant Information
Position: Chr03:4222962..4227949 (+ strand)
Length: 4988
Functional Information:
Description: Similar to polygalacturonase. [XP_003545367.1, Glycine max]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Molecular Function: polygalacturonase activity (GO:0004650)
InterPro: Glycoside hydrolase, family 28 (IPR000743)
Parallel beta-helix repeat (IPR006626)
Pectin lyase fold/virulence factor (IPR011050)
Pectin lyase fold (IPR012334)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.15,2.45,29.08,9.89,0.62,17.05,6.76,17.59
Arabidopsis thaliana homolog: AT4G23820.1, AT5G41870.1
Automatic updates:
Name: KM399781 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pectin lyase-like superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM399791 NCBI(nuccore)
Organism: Medicago truncatula
Description: Medicago truncatula pectin lyase-like superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Name: KM399800 NCBI(nuccore)
Organism: Phaseolus vulgaris
Description: Phaseolus vulgaris pectin lyase-like superfamily protein mRNA, partial cds.
PubMed ID: 25249442 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:4222962..4223261 (+ strand)
Length: 300
Type: five_prime_UTR
Position: Chr03:4223262..4223585 (+ strand)
Length: 324
Type: CDS
Position: Chr03:4224466..4224586 (+ strand)
Length: 121
Type: CDS
Position: Chr03:4226232..4226406 (+ strand)
Length: 175
Type: CDS
Position: Chr03:4226508..4226578 (+ strand)
Length: 71
Type: CDS
Position: Chr03:4227104..4227741 (+ strand)
Length: 638
Type: CDS
Position: Chr03:4227742..4227949 (+ strand)
Length: 208
Type: three_prime_UTR


>Vigan.03G045100.01
CTTCTCCTCA AAAGTTTTGG CAAAAATAAG AAGGGAAAGG TAAAGGGAAA TGCAATAGGA TTTTGAAGGA TTCTGCATCC
AATTTCAATC ACCACACCCA CACGCACATT TACACGAGAG TGAGAGTGCT AGTGATTCTC TGTGTGTGTG AGGACAACAG
AACCAAACAA TTACTTCCAC TTTTAATGTT TTCACCAACC ACCATACGTA CGCACATAGC AGAACCCACT GCCCTTAACT
TCAGACAGAG CCCTTTTAGT TTCACTGGTT CTTCGTTTCT CCGAATCTGA TCCAGCAAAA ATGCGCCTTC GCTTCTTCAC
GTTGCTGTGT TTGTGCTGTT GCTGGTTCGT CTCTAGCGAG GGCGAAACGG TGTCGTGTTC GAACATAGTG TCGTCGGGGT
TCCGCAGCGA CAACATTTCC ATAACTGATT TCGGCGGCGT GGGTGATGGC CACACCCTCA ACACCAAGGC CTTCAGGGAG
GCCATATACA GGATTCAGCG CTTGACACGT GTAGGAGGCA CGCTCCTCTA TGTCCCTCCC GGAGTCTACT TAACGGAACC
CTTCAACCTC ACCAGCCACA TGACGCTCTA CCTCGCCGCC GGTGCCGTTA TTATGGCCAC GCAGGATTCA TCGAATTGGC
CTTTGATTGC ACCCTTGCCT TCTTATGGAA GAGGAAGGGA GCTGCCTGGT GGAAGGTATA TGAGTTTTAT GCATGGAGAT
GGAGTTCAGG ATGTGGTAAT CACTGGTGAA AATGGAACAA TTGATGGACA GGGCGATCTG TGGTGGAATA AGTGGAGGCA
GAGATCTCTT CAGTTTACCA GACCAAACCT TGTTGAATTT GTAAATTCTA GAGACATTAT TATTTCAAAT GTAATCTTCA
AGAATTCTCC TTTCTGGAAC ATACACCCGG TTTACAGCAG CAATATTGTT GTTCGATTTG TCACCATTTT GGCGCCACGT
GACTCTCCAA ATACTGATGG CATTGATCCA GATTCAAGTT CAAATGTGTG CATAGAGGAT TCATACATAT CTACTGGAGA
TGATCTTGTG GCTGTGAAGA GTGGATGGGA TGAATACGGG ATTGCTTATG GCCTTCCTAG CTCTAACATC ACCATCAGGC
GTGTAAGTGG ATCATCTCCA TTTGCTGGAA TTGCTGTTGG CAGTGAAACC TCTGGTGGGG TGGAGAATGT ACTTGCTGAG
CACATCAACC TTTACAAAAT GGGAATTGGT ATCCACATTA AGACAAACAG TGGCAGGGGT GGATTCATAA AGAATATAAC
CGTGTCTCAT GTGTATATAG AGGAGGCAAG GAAGGGAATA AGAATCTCAG GTGATGTTGG GGACCACCCA GATGACAAAT
TTGATCCCAA TGCTCTCCCC CTTGTGAAGG GTGTCACAAT TAAGAATGTT TGGGGTGTGA AGGTTTTGCA GGCTGGCTTG
ATACAAGGGG TGAAAAATTC ACCTTTCACT GATATTTGCC TTTATGATAT CAACCTTCGA GGAGTGACAG AACCTAGAAC
TCCTCCTTGG AAATGTTCTG ATGTGTCTGG ATTTGCTCAT CAGGTTAGCC CTTGGCCATG TTCTGAGCTT AGCAGCAACC
AGCAAGGATC ATGTGCCAAT TATTCCTGAG ATTATAGGAA TATTTTCACC TTTGTAGCAT GAGAGCAGCA GCCATTGGCT
TCTTTTGCTG ATTTATCGCA ATGAAAGGCA TTGCAAAATG AAGACTTGTT TGTTTAAATT TTAGTAGAAT TTATTTAGAC
TAATAATTTT AAATTGTTAA ATGTAATTGA AATGTATGTC GAAGTTAATT TCAATAATAA AAATTATGTT TAAACAT

>Vigan.03G045100.01
ATGCGCCTTC GCTTCTTCAC GTTGCTGTGT TTGTGCTGTT GCTGGTTCGT CTCTAGCGAG GGCGAAACGG TGTCGTGTTC
GAACATAGTG TCGTCGGGGT TCCGCAGCGA CAACATTTCC ATAACTGATT TCGGCGGCGT GGGTGATGGC CACACCCTCA
ACACCAAGGC CTTCAGGGAG GCCATATACA GGATTCAGCG CTTGACACGT GTAGGAGGCA CGCTCCTCTA TGTCCCTCCC
GGAGTCTACT TAACGGAACC CTTCAACCTC ACCAGCCACA TGACGCTCTA CCTCGCCGCC GGTGCCGTTA TTATGGCCAC
GCAGGATTCA TCGAATTGGC CTTTGATTGC ACCCTTGCCT TCTTATGGAA GAGGAAGGGA GCTGCCTGGT GGAAGGTATA
TGAGTTTTAT GCATGGAGAT GGAGTTCAGG ATGTGGTAAT CACTGGTGAA AATGGAACAA TTGATGGACA GGGCGATCTG
TGGTGGAATA AGTGGAGGCA GAGATCTCTT CAGTTTACCA GACCAAACCT TGTTGAATTT GTAAATTCTA GAGACATTAT
TATTTCAAAT GTAATCTTCA AGAATTCTCC TTTCTGGAAC ATACACCCGG TTTACAGCAG CAATATTGTT GTTCGATTTG
TCACCATTTT GGCGCCACGT GACTCTCCAA ATACTGATGG CATTGATCCA GATTCAAGTT CAAATGTGTG CATAGAGGAT
TCATACATAT CTACTGGAGA TGATCTTGTG GCTGTGAAGA GTGGATGGGA TGAATACGGG ATTGCTTATG GCCTTCCTAG
CTCTAACATC ACCATCAGGC GTGTAAGTGG ATCATCTCCA TTTGCTGGAA TTGCTGTTGG CAGTGAAACC TCTGGTGGGG
TGGAGAATGT ACTTGCTGAG CACATCAACC TTTACAAAAT GGGAATTGGT ATCCACATTA AGACAAACAG TGGCAGGGGT
GGATTCATAA AGAATATAAC CGTGTCTCAT GTGTATATAG AGGAGGCAAG GAAGGGAATA AGAATCTCAG GTGATGTTGG
GGACCACCCA GATGACAAAT TTGATCCCAA TGCTCTCCCC CTTGTGAAGG GTGTCACAAT TAAGAATGTT TGGGGTGTGA
AGGTTTTGCA GGCTGGCTTG ATACAAGGGG TGAAAAATTC ACCTTTCACT GATATTTGCC TTTATGATAT CAACCTTCGA
GGAGTGACAG AACCTAGAAC TCCTCCTTGG AAATGTTCTG ATGTGTCTGG ATTTGCTCAT CAGGTTAGCC CTTGGCCATG
TTCTGAGCTT AGCAGCAACC AGCAAGGATC ATGTGCCAAT TATTCCTGA

>Vigan.03G045100.01
MRLRFFTLLC LCCCWFVSSE GETVSCSNIV SSGFRSDNIS ITDFGGVGDG HTLNTKAFRE AIYRIQRLTR VGGTLLYVPP
GVYLTEPFNL TSHMTLYLAA GAVIMATQDS SNWPLIAPLP SYGRGRELPG GRYMSFMHGD GVQDVVITGE NGTIDGQGDL
WWNKWRQRSL QFTRPNLVEF VNSRDIIISN VIFKNSPFWN IHPVYSSNIV VRFVTILAPR DSPNTDGIDP DSSSNVCIED
SYISTGDDLV AVKSGWDEYG IAYGLPSSNI TIRRVSGSSP FAGIAVGSET SGGVENVLAE HINLYKMGIG IHIKTNSGRG
GFIKNITVSH VYIEEARKGI RISGDVGDHP DDKFDPNALP LVKGVTIKNV WGVKVLQAGL IQGVKNSPFT DICLYDINLR
GVTEPRTPPW KCSDVSGFAH QVSPWPCSEL SSNQQGSCAN YS*