VIGGS:GBrowse

Vigan.03G048100.01

Basic Information:

Name:	Vigan.03G048100.01 Multiple alignment Variant Information
Position:	Chr03:4583099..4586693 (- strand)
Length:	3595

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JIW7, Glycine max]
GO:	Biological Process: transport (GO:0006810)
	Biological Process: vesicle-mediated transport (GO:0016192)
	Cellular Component: integral to membrane (GO:0016021)
InterPro:	Synaptobrevin (IPR001388)
	Longin domain (IPR010908)
	Longin-like domain (IPR011012)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:26.03,21.36,20.56,17.99,22.54,39.92,53.40,30.21
Arabidopsis thaliana homolog:	AT5G11150.1

Structure :

[show][hide]Parts:

Position:	Chr03:4583099..4583794 (- strand)
Length:	696
Type:	three_prime_UTR

Position:	Chr03:4583795..4583882 (- strand)
Length:	88
Type:	CDS

Position:	Chr03:4585204..4585367 (- strand)
Length:	164
Type:	CDS

Position:	Chr03:4586035..4586225 (- strand)
Length:	191
Type:	CDS

Position:	Chr03:4586315..4586531 (- strand)
Length:	217
Type:	CDS

Position:	Chr03:4586532..4586693 (- strand)
Length:	162
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G048100.01
TTCCAATCAG AAAGCAGAAG GCAGTGATGA TGGTAAAAGC AAAAAGTCAA GAAGAAAGGG ACACTTCATG AACAGAAGTG
GAAGAAGAAG AGAATAGAAG AGAAGAGGGT TCGGTATTGT GTTGTGTTGG CGCTTTTCGA TTGATTCACC GATCGGAACC
GAATGGGGAT TCTGTACGCG CTGGTAGGTC GCGGATCGGT GGTGCTGGCG GAGTACAGCG GCACCACCAC CAACGCCAGC
GCAATCGCGC GGCAGATTCT CGAGAAGATC CCAGGCAACA ACGACACGCA CGTTTCCTAC TCTCAGGATC GCTACATCTT
CCACGTTAAA CGCACCGATG GGCTCACCGT TCTCTGCATG GCTGACGACA CTGCCGGCAG GAGACTTCCT TTCGCGTTTC
TCGAGGATAT TCATCAGAAG TTCGTGCGGA CTTACGGGCG AGCCGTTCAC TCCGCGCAGC CTTACGGAAT GAACGAGGAG
TTCTCTAGGG TTTTGAATCA GCAGATGGAG TATTACTCCA GCGATCCTAA CGCCGATAGG ATCAATCGGC TCAAAGGTGA
AATGTCTCAG GTACGAAATG TCATGATAGA AAATATTGAC AAAGTTTTAG ATCGAGGTGA TCGGTTGGAG TTGCTTGTGG
ATAAAACTGC TAATATGCAA GGAAATACAT TTCGCTTCAG GAAGCAAGCT CGCCGCTTCA GAAGCACCGT GTGGTGGAGA
AATGTCAAGC TCACGGTTGC ACTTATTCTC ATCCTACTTG TAGTAGTTTA TGTTGTGCTG GCTTTTGTTT GCCATGGGCC
CGCGCTACCA TCTTGCTTTT AGTGAAGGAT TGGCAAGTGA ATTCTATGTG TGCTTCCTTG TGGTCTTCAA CTTGCAGACG
TCACTTCTTT TTTATCTGCC TTTGATTTGC AGATTCCATT TCTTCAACTA TATTACTGGG TTGTCCACTT TTCTGCTAGT
GAATTTCTTG CCATAGATTG AAGTGTTCTT TTCTTTTTCA TATAAAGTTT GAGGGGCAGA AAACTTATAT CGTTTATTGT
ATTCTCATAC CAGCCCAAAG ATTTTAGTTG ATGTATAGTG TTGCAGCTTG AGGGTGTCAT GAATGTTCTC TTGTTCAAAA
CGGGGAAGGG TAAGTCTTAA ATTCCATTTG TTTTTTCATA GCTCAGTGAA CCGGTATTGT TAAACTTCTC GGCCCTTGTT
CTCTTTGTCA GCTTAATGTA TATTTTTTTA ATTTATCCAT GTTCTCCTGT TTTTAACCTT GCTAAACCTT AAGATTGCAC
AAGTTGCTAT AAATTAATTT TGAAGAAAAA GGTATGTAAA GGTGGACCAT GGAACAACTG CTCCATCTTA GCCATATTTT
TGAGCTGTAA GAGACCATCT CTGACGTTTG TTATATTGAC AGCATGTTTG GATCTGTCTG TCTAGCCAGA AAGCTAATGA
ACGCCAGTTG AAGAAAGCAA CGGTGTGAAG TAATTCACGC GTCACTTTTT TACCGTTAAT GAACAACTAT TGTGGCGG

[show][hide][copy]CDS

>Vigan.03G048100.01
ATGGGGATTC TGTACGCGCT GGTAGGTCGC GGATCGGTGG TGCTGGCGGA GTACAGCGGC ACCACCACCA ACGCCAGCGC
AATCGCGCGG CAGATTCTCG AGAAGATCCC AGGCAACAAC GACACGCACG TTTCCTACTC TCAGGATCGC TACATCTTCC
ACGTTAAACG CACCGATGGG CTCACCGTTC TCTGCATGGC TGACGACACT GCCGGCAGGA GACTTCCTTT CGCGTTTCTC
GAGGATATTC ATCAGAAGTT CGTGCGGACT TACGGGCGAG CCGTTCACTC CGCGCAGCCT TACGGAATGA ACGAGGAGTT
CTCTAGGGTT TTGAATCAGC AGATGGAGTA TTACTCCAGC GATCCTAACG CCGATAGGAT CAATCGGCTC AAAGGTGAAA
TGTCTCAGGT ACGAAATGTC ATGATAGAAA ATATTGACAA AGTTTTAGAT CGAGGTGATC GGTTGGAGTT GCTTGTGGAT
AAAACTGCTA ATATGCAAGG AAATACATTT CGCTTCAGGA AGCAAGCTCG CCGCTTCAGA AGCACCGTGT GGTGGAGAAA
TGTCAAGCTC ACGGTTGCAC TTATTCTCAT CCTACTTGTA GTAGTTTATG TTGTGCTGGC TTTTGTTTGC CATGGGCCCG
CGCTACCATC TTGCTTTTAG

[show][hide][copy]PROTEIN

>Vigan.03G048100.01
MGILYALVGR GSVVLAEYSG TTTNASAIAR QILEKIPGNN DTHVSYSQDR YIFHVKRTDG LTVLCMADDT AGRRLPFAFL
EDIHQKFVRT YGRAVHSAQP YGMNEEFSRV LNQQMEYYSS DPNADRINRL KGEMSQVRNV MIENIDKVLD RGDRLELLVD
KTANMQGNTF RFRKQARRFR STVWWRNVKL TVALILILLV VVYVVLAFVC HGPALPSCF*