GBrowse Details

Vigan.03G048400.01

Basic Information:
Name: Vigan.03G048400.01
Multiple alignment
Variant Information
Position: Chr03:4606852..4610464 (+ strand)
Length: 3613
Functional Information:
Description: Similar to uncharacterized protein. [C6TDB5, Glycine max]
GO: Molecular Function: isomerase activity (GO:0016853)
InterPro: Peptidyl-prolyl cis-trans isomerase, PpiC-type (IPR000297)
Rhodanese-like domain (IPR001763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:30.40,30.56,10.56,25.49,11.89,16.73,5.64,6.58
Arabidopsis thaliana homolog: AT5G19370.1
Automatic updates:
Name: NM_001253112 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100803404 (LOC100803404), mRNA; nuclear gene for chloroplast product.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Name: NM_001289321 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max rhodanese-like/PpiC domain-containing protein 12-like (LOC100779438), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:4606852..4606944 (+ strand)
Length: 93
Type: five_prime_UTR
Position: Chr03:4606945..4607140 (+ strand)
Length: 196
Type: CDS
Position: Chr03:4607330..4607455 (+ strand)
Length: 126
Type: CDS
Position: Chr03:4607572..4607663 (+ strand)
Length: 92
Type: CDS
Position: Chr03:4607978..4608078 (+ strand)
Length: 101
Type: CDS
Position: Chr03:4608283..4608393 (+ strand)
Length: 111
Type: CDS
Position: Chr03:4608741..4608849 (+ strand)
Length: 109
Type: CDS
Position: Chr03:4609314..4609364 (+ strand)
Length: 51
Type: CDS
Position: Chr03:4610150..4610230 (+ strand)
Length: 81
Type: CDS
Position: Chr03:4610231..4610464 (+ strand)
Length: 234
Type: three_prime_UTR


>Vigan.03G048400.01
TTTTGATAAA TTAGATGGTG TTCATAGGAA GGTGAGTGTA GGTGAAGTGT AACATGTGAA GTGAGTCTTG CAAAGGAAAT
ATCAATAGCT ATAATGTCAA TTTTGAGAGG AATTTGTGTG CTGAGAGTGG GAGTGGCAAC TCCAAAACCT TACCTTCTTC
CCTCTATCTT TTCATCATCC TTCAACATTC GTACCCTCTC ACACACCACT TTTTCCAGAA CCTTTCGTTT CCTCCCACCT
TCAATTCCTC TTTCATCCTT TGTGCCTCTC ATACCTCCCA AAGCAGCAGC CTCTTATGGC ACTGGGAGTG GTGGTGCTGA
AGATGGTAGG CCAAGGGAAC TATTGGTGCA GCATTTGTTG GTCAAAGAAG ATGACCAGAA GCTTCTGTTG GATCTTCTGC
AAAAAATCTC TTCAGGTGAA GATTTGAGTG ATCTTGCTGT GGAACATTCA GTTTGCCCAT CCAAAGAAGA AGGAGGAATG
CTTGGATGGG TCAAAAAGGG TCAAATGGTT CCTGAATTTG AGGAGGCTGC GTTCAGTGCA CCTTTAAACA AAGTTGTAAA
GTGCAAAACC AAATTCGGAT GGCACCTGCT GCAGGTTTTA TCTGAAAGGG AAGAATCAAT TCTTCAAGAC ATTCAACCTC
ATGAGCTGCA TGGGAAAATT CAAGATCCCA ATTTTTTGGA GGAGGCACAG CTAATTGACG TTCGAGAGCC TGAAGAAGTG
GCTAAAGCAT CTTTGCCAGG ATTTACTGTT CTTCCCCTCC GACAATTTGG AAGCTGGGGG CCTGAAATAA CTAAAAAACT
TGACCCTGAA AAGGATATAT ACGTTATGTG TCATCATGGC ATGCGGTCAT TACAGGTTGC CAAATGGTTG CTGTCACAGG
GCTTCAGGAA AGTATACAAT GTTTCTGGGG GAATCCATGC CTATGCTGTT CAGGTTGATC CATCAGTACC CACATACTGA
TCACATTACC TTTAGGAATT GGAACTCTCT CTTATTATGG ACATGTATTC ATTTTCAATT TTCAAGGTTA CATATTCTTA
GAATAGTTTA TGTTATTTGA ATAATCATTT CAATACTCTA TGGCTCTCTG TTCCTGACAG AAAATGGATT CATACAACTC
CTTTCTGATC TGAAAATATA GTTTTTCTGA CCAAATTTTC AAAGAGCCAA AAAATGGTTG ATAAAAACCT TTTT

>Vigan.03G048400.01
ATGTCAATTT TGAGAGGAAT TTGTGTGCTG AGAGTGGGAG TGGCAACTCC AAAACCTTAC CTTCTTCCCT CTATCTTTTC
ATCATCCTTC AACATTCGTA CCCTCTCACA CACCACTTTT TCCAGAACCT TTCGTTTCCT CCCACCTTCA ATTCCTCTTT
CATCCTTTGT GCCTCTCATA CCTCCCAAAG CAGCAGCCTC TTATGGCACT GGGAGTGGTG GTGCTGAAGA TGGTAGGCCA
AGGGAACTAT TGGTGCAGCA TTTGTTGGTC AAAGAAGATG ACCAGAAGCT TCTGTTGGAT CTTCTGCAAA AAATCTCTTC
AGGTGAAGAT TTGAGTGATC TTGCTGTGGA ACATTCAGTT TGCCCATCCA AAGAAGAAGG AGGAATGCTT GGATGGGTCA
AAAAGGGTCA AATGGTTCCT GAATTTGAGG AGGCTGCGTT CAGTGCACCT TTAAACAAAG TTGTAAAGTG CAAAACCAAA
TTCGGATGGC ACCTGCTGCA GGTTTTATCT GAAAGGGAAG AATCAATTCT TCAAGACATT CAACCTCATG AGCTGCATGG
GAAAATTCAA GATCCCAATT TTTTGGAGGA GGCACAGCTA ATTGACGTTC GAGAGCCTGA AGAAGTGGCT AAAGCATCTT
TGCCAGGATT TACTGTTCTT CCCCTCCGAC AATTTGGAAG CTGGGGGCCT GAAATAACTA AAAAACTTGA CCCTGAAAAG
GATATATACG TTATGTGTCA TCATGGCATG CGGTCATTAC AGGTTGCCAA ATGGTTGCTG TCACAGGGCT TCAGGAAAGT
ATACAATGTT TCTGGGGGAA TCCATGCCTA TGCTGTTCAG GTTGATCCAT CAGTACCCAC ATACTGA

>Vigan.03G048400.01
MSILRGICVL RVGVATPKPY LLPSIFSSSF NIRTLSHTTF SRTFRFLPPS IPLSSFVPLI PPKAAASYGT GSGGAEDGRP
RELLVQHLLV KEDDQKLLLD LLQKISSGED LSDLAVEHSV CPSKEEGGML GWVKKGQMVP EFEEAAFSAP LNKVVKCKTK
FGWHLLQVLS EREESILQDI QPHELHGKIQ DPNFLEEAQL IDVREPEEVA KASLPGFTVL PLRQFGSWGP EITKKLDPEK
DIYVMCHHGM RSLQVAKWLL SQGFRKVYNV SGGIHAYAVQ VDPSVPTY*