VIGGS:GBrowse

Vigan.03G049200.01

Basic Information:

Name:	Vigan.03G049200.01 Multiple alignment Variant Information
Position:	Chr03:4640434..4642402 (+ strand)
Length:	1969

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M761, Glycine max]
GO:	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Biological Process: response to heat (GO:0009408)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
	Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro:	Heat shock factor (HSF)-type, DNA-binding (IPR000232)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	Heat shock transcription factor, plant (IPR027709)
	Heat shock transcription factor family (IPR027725)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.07,1.74,0.20,0.44,0.10,0.88,6.29,1.28

Automatic updates:

Name:	BT092544 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-11O9 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:4640434..4640990 (+ strand)
Length:	557
Type:	five_prime_UTR

Position:	Chr03:4640991..4641242 (+ strand)
Length:	252
Type:	CDS

Position:	Chr03:4641604..4642170 (+ strand)
Length:	567
Type:	CDS

Position:	Chr03:4642171..4642402 (+ strand)
Length:	232
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G049200.01
ATATATATAT ATATCCCATT GGTATCACTC CAAAATAAAA ATAGAAAGTA GCTCACATCT CTAGAAGCAT CACAACCCAC
CACCACTGCA TCTCAGAGAA CAATCAATAG CTAATTAATA GCTCATTGGA TCTTATTATA GCTTATCCTA GAAAAATACA
TTGTTTTTAC TGACATGGTC ATATGCTTCT TAAAGTTTGT AAACTAACTA CACACATGAT AGAGGGGGGG TCGGACAAAG
AATAGTTATT TAAGTAAATA TGTCATATGT TTCTGTTTCA GAGTTGTAAA ACTATGAGTA ATGATACTTG CATATGTGCA
TAGTGTACAC TTTCTTAGCA TCACATAGTG TTATTTATTA TACTTTTTCT TCTGTATCTG TTAATCTCTC TTTAGGGTCT
AATAGCATAG CACATAAGTA TGCATGCATC ATTTTTCAAA ATATAATGTG AGAGAGAGTG AATGAGGTTC TTTAAAACTT
GGTGGTGTGG TAAAAGTGAA TGAAGAGGAG AGCTCCAAAG CATAGTATTG GAAGCAGCAG CACTCTTTGG TTCAGTGATG
GCTTTCACAC TAGACAGGTG TGAAGACAGC ATGGTATTCA CCATGGATTC TCAGAAGTCT GTGCCTGCTC CCTTTCTGAC
AAAAACATAC CAACTTGTTG ATGACCCTCT CACTGACCAC ATTGTGTCTT GGGGTGATGA TGAAACCACG TTTGTTGTGA
GAAGGCCCCC AGAGTTTGCT AGAGATCTTC TTCCAAACTA TTTCAAGCAC AACAACTTCT CAAGCTTTGT TAGACAGCTA
AATACCTATG GTTTCAAGAA GGTAGCTGCT GATAGGTGGG AGTTTGCAAA TGAATACTTC AGAAAAGGAT CTAAGCACCT
TCTATGTGAA ATCCACAGGA GGAAAACCCC TCACCCTTAT CAACAACATT ACCATATGCA TGACCAACCA CCACAGCTTC
TTCAGCCAGA TGAGAATCTG TGTTGGATTG ATACTCCTCC ATTACCATCT CCTAAGGCAG GCAATGATAT CTTAACAGCA
CTTTCTGAGG ACAACCAGAG ACTGAGAAGA AAGAACTTCA TGCTGTTATC AGAACTGACT CACATGAAGA ATCTATACAA
TGATATCATA TATTTCATCC AAAACCATGT AAGTCCTGCT TCCTATGAAC AAAGAAGCAG CAGTGCTATT CTGAAGCTGG
TAGAATTGGA ATCATCACCT CAGTCTCGAA ATTTGATCAG AGCAGCTAAG AGTCATATCA TGGAGAAGTC TTTGGTAAGT
TCCAGTGATG AGGCTAATGG TTCTGTGAAG CTCTTTGGGG TTCCTCTCTG TGGCAAAAAG AGATTGCACC CAGGTAACCT
TCATCAACAA GAATAGTATG CACTTCTCAG TCAGAACTTC TTCACATTAT GTTTATCAGC TTTTATTGAA CAACTCTCAC
TGATTTTGCT GACATTTGAA GAGAAGCATG TATAGAAGAG GCTTGTGTTC AGATTAGCTA GACTTGTTTC TTTAGAACTT
TCTTCTAGAT TATATGTTTC TGAAAGAAAA AAACCATAAA AAGAAAAAAA AGAACAGTTG TTTGCTTATT TTATAGTCCA
AAAATAAA

[show][hide][copy]CDS

>Vigan.03G049200.01
ATGGCTTTCA CACTAGACAG GTGTGAAGAC AGCATGGTAT TCACCATGGA TTCTCAGAAG TCTGTGCCTG CTCCCTTTCT
GACAAAAACA TACCAACTTG TTGATGACCC TCTCACTGAC CACATTGTGT CTTGGGGTGA TGATGAAACC ACGTTTGTTG
TGAGAAGGCC CCCAGAGTTT GCTAGAGATC TTCTTCCAAA CTATTTCAAG CACAACAACT TCTCAAGCTT TGTTAGACAG
CTAAATACCT ATGGTTTCAA GAAGGTAGCT GCTGATAGGT GGGAGTTTGC AAATGAATAC TTCAGAAAAG GATCTAAGCA
CCTTCTATGT GAAATCCACA GGAGGAAAAC CCCTCACCCT TATCAACAAC ATTACCATAT GCATGACCAA CCACCACAGC
TTCTTCAGCC AGATGAGAAT CTGTGTTGGA TTGATACTCC TCCATTACCA TCTCCTAAGG CAGGCAATGA TATCTTAACA
GCACTTTCTG AGGACAACCA GAGACTGAGA AGAAAGAACT TCATGCTGTT ATCAGAACTG ACTCACATGA AGAATCTATA
CAATGATATC ATATATTTCA TCCAAAACCA TGTAAGTCCT GCTTCCTATG AACAAAGAAG CAGCAGTGCT ATTCTGAAGC
TGGTAGAATT GGAATCATCA CCTCAGTCTC GAAATTTGAT CAGAGCAGCT AAGAGTCATA TCATGGAGAA GTCTTTGGTA
AGTTCCAGTG ATGAGGCTAA TGGTTCTGTG AAGCTCTTTG GGGTTCCTCT CTGTGGCAAA AAGAGATTGC ACCCAGGTAA
CCTTCATCAA CAAGAATAG

[show][hide][copy]PROTEIN

>Vigan.03G049200.01
MAFTLDRCED SMVFTMDSQK SVPAPFLTKT YQLVDDPLTD HIVSWGDDET TFVVRRPPEF ARDLLPNYFK HNNFSSFVRQ
LNTYGFKKVA ADRWEFANEY FRKGSKHLLC EIHRRKTPHP YQQHYHMHDQ PPQLLQPDEN LCWIDTPPLP SPKAGNDILT
ALSEDNQRLR RKNFMLLSEL THMKNLYNDI IYFIQNHVSP ASYEQRSSSA ILKLVELESS PQSRNLIRAA KSHIMEKSLV
SSSDEANGSV KLFGVPLCGK KRLHPGNLHQ QE*