GBrowse Details

Vigan.03G052900.01

Basic Information:
Name: Vigan.03G052900.01
Multiple alignment
Variant Information
Position: Chr03:5010354..5014018 (- strand)
Length: 3665
Functional Information:
Description: Similar to Translational elongation factor 1 subunit beta. [T2DP50, Phaseolus vulgaris]
GO: Biological Process: translational elongation (GO:0006414)
Cellular Component: eukaryotic translation elongation factor 1 complex (GO:0005853)
Molecular Function: translation elongation factor activity (GO:0003746)
InterPro: Translation elongation factor EF1B, beta/delta chains, conserved site (IPR001326)
Glutathione S-transferase, C-terminal-like (IPR010987)
Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange (IPR014038)
Translation elongation factor EF1B/ribosomal protein S6 (IPR014717)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:69.44,126.83,114.31,70.12,185.49,310.52,150.64,109.06
Arabidopsis thaliana homolog: AT5G12110.1
Automatic updates:
Name: NM_001249608 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max elongation factor 1-beta (ELF1B), mRNA.
PubMed ID: 28319089 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:5010354..5010700 (- strand)
Length: 347
Type: three_prime_UTR
Position: Chr03:5010701..5010864 (- strand)
Length: 164
Type: CDS
Position: Chr03:5011143..5011256 (- strand)
Length: 114
Type: CDS
Position: Chr03:5011526..5011643 (- strand)
Length: 118
Type: CDS
Position: Chr03:5013395..5013467 (- strand)
Length: 73
Type: CDS
Position: Chr03:5013581..5013697 (- strand)
Length: 117
Type: CDS
Position: Chr03:5013806..5013891 (- strand)
Length: 86
Type: CDS
Position: Chr03:5013892..5014018 (- strand)
Length: 127
Type: five_prime_UTR


>Vigan.03G052900.01
GTTGGGACTG ATCTAGGGTT TGTGACTATG CAGACTATAA ATATCAATCA TTGAACACAA GCAGAAGCTT TTTCTATTCT
TCCCACTCCA CACTCTGCAT TGCCACTCTT CTATTCAATC ACACCAGATG GCTGTCACCT TCTCAGATCT ACACACCGAA
GAGGGTATCA AAACCCTCGA TCAATTCCTT TCTGGGAAAA CCTATATTTC TGGGGATCTA TTCACAAAGG ATGATATCAA
AGTGTATGCA GCTGTTGTGG AAAAGCCTGG GGACTCTTTC CCCAATGCTG CCAAGTGGTA CGATGCTGTC TCTTCTCATC
TTGCCTCAAG CTTCCCTGGG AAGGCTCAAG GGGTTAGATT CAGTACCGTA GCTGCTCCAG CTGAAGCTGC ACCTGCCAAA
TCGGCTGCTA CTGCTGATGA AGATGATGAT GATCTTGATC TCTTTGGTGA CGAGACAGAG GAGGATAAGA AGGCAGCAGA
GGAAAGGGAG GCTGCTAAAA AGCCTGCCAA GAAAAAAGAG AGTGGCAAGT CTTCTGTCCT ACTCGATGTC AAGCCTTGGG
ATGATGAGAC CGACATGAAG AAGCTGGAAG AGGCTGTCCG CAGTATTGAG ATGCCTGGTT TATTGTGGGG AGCATCCAAA
CTGGTGCCAG TGGGATATGG AATCAAGAAG TTGCAGATCA TGATGACTAT TGTGGATGAC CTTGTATCTG TGGACACCCT
CATCGAAGAA CACCTGACTG TTGAGCCATG CAACGAGTAT ATCCAAAGTT GTGACATTGT TGCATTCAAC AAAATTTAAG
TTTTCTTGTT GGATTTCGAG TTTGGCCATT TTCAAGCGGC TGATCAGACT CTGAGTCTGA TTGATACTCC CTCCCTTTCA
TTCTTCGTGT TTGGTATGTT TCTGTAGTGG TTTTGTTGCA AGAATTGTGA GAAGGAAAAC AGATAGATAT ACTGAGTATC
CATGTTATGG TGTAACTTTG AATATTACTT TTTGATTTAG ATACCAAGAT AAATGAACAA ATGTTCTTGC ATTTAATTGT
TTATAAGTTT CTCAGCTCTA AACAGGTTTG GTTCCTGACT CGTGACCATT ATATGTTCTT TTTAAGTTAT TTATTGGTGC
TTAGTTGTTG TTGTTGTTGG AACCAA

>Vigan.03G052900.01
ATGGCTGTCA CCTTCTCAGA TCTACACACC GAAGAGGGTA TCAAAACCCT CGATCAATTC CTTTCTGGGA AAACCTATAT
TTCTGGGGAT CTATTCACAA AGGATGATAT CAAAGTGTAT GCAGCTGTTG TGGAAAAGCC TGGGGACTCT TTCCCCAATG
CTGCCAAGTG GTACGATGCT GTCTCTTCTC ATCTTGCCTC AAGCTTCCCT GGGAAGGCTC AAGGGGTTAG ATTCAGTACC
GTAGCTGCTC CAGCTGAAGC TGCACCTGCC AAATCGGCTG CTACTGCTGA TGAAGATGAT GATGATCTTG ATCTCTTTGG
TGACGAGACA GAGGAGGATA AGAAGGCAGC AGAGGAAAGG GAGGCTGCTA AAAAGCCTGC CAAGAAAAAA GAGAGTGGCA
AGTCTTCTGT CCTACTCGAT GTCAAGCCTT GGGATGATGA GACCGACATG AAGAAGCTGG AAGAGGCTGT CCGCAGTATT
GAGATGCCTG GTTTATTGTG GGGAGCATCC AAACTGGTGC CAGTGGGATA TGGAATCAAG AAGTTGCAGA TCATGATGAC
TATTGTGGAT GACCTTGTAT CTGTGGACAC CCTCATCGAA GAACACCTGA CTGTTGAGCC ATGCAACGAG TATATCCAAA
GTTGTGACAT TGTTGCATTC AACAAAATTT AA

>Vigan.03G052900.01
MAVTFSDLHT EEGIKTLDQF LSGKTYISGD LFTKDDIKVY AAVVEKPGDS FPNAAKWYDA VSSHLASSFP GKAQGVRFST
VAAPAEAAPA KSAATADEDD DDLDLFGDET EEDKKAAEER EAAKKPAKKK ESGKSSVLLD VKPWDDETDM KKLEEAVRSI
EMPGLLWGAS KLVPVGYGIK KLQIMMTIVD DLVSVDTLIE EHLTVEPCNE YIQSCDIVAF NKI*