GBrowse Details

Vigan.03G054100.01

Basic Information:
Name: Vigan.03G054100.01
Multiple alignment
Variant Information
Position: Chr03:5117880..5124667 (- strand)
Length: 6788
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIS3, Glycine max]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: exonuclease activity (GO:0004527)
InterPro: Exonuclease (IPR006055)
Ribonuclease H-like domain (IPR012337)
Exonuclease, RNase T/DNA polymerase III (IPR013520)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.69,7.55,10.70,12.80,9.36,13.90,10.18,10.80
Arabidopsis thaliana homolog: AT2G26970.1
Automatic updates:
Name: NM_001251613 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max Orn domain-containing protein (LOC100527858), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:5117880..5118085 (- strand)
Length: 206
Type: three_prime_UTR
Position: Chr03:5118086..5118204 (- strand)
Length: 119
Type: CDS
Position: Chr03:5119241..5119331 (- strand)
Length: 91
Type: CDS
Position: Chr03:5119770..5119862 (- strand)
Length: 93
Type: CDS
Position: Chr03:5121171..5121226 (- strand)
Length: 56
Type: CDS
Position: Chr03:5121467..5121548 (- strand)
Length: 82
Type: CDS
Position: Chr03:5122207..5122283 (- strand)
Length: 77
Type: CDS
Position: Chr03:5123154..5123288 (- strand)
Length: 135
Type: CDS
Position: Chr03:5124457..5124529 (- strand)
Length: 73
Type: CDS
Position: Chr03:5124530..5124667 (- strand)
Length: 138
Type: five_prime_UTR


>Vigan.03G054100.01
TCTGTTTAAT CGTAAATTTT AACGAAGTTT TTTCAGTTAA ATTTGAACCT GAAACTTTGT TCTGTCTTCA TTTATTTTTA
ACAGCGCCAA AGTTGAAGAG TTTGAAGTAC AGAAAAGAAA GAAGGAAAGA AAAAAAAAAT GGAAAAACTC GCAAATTCGT
TTTCAGTGTT AGAACTCGAC GCCGGCGATA GTCACGTTCC CACCACCGCA GATAACAGTG GCAAGGGAGT TAATCCTGAC
ATTGGCGTTA TACCAGTAAA GAACAAGAAA CAAGATCAAG AAAATGAAGT GTTTCCTTCA TGTGAATACA AGTTACCTCT
GGTGTGGATT GACTTGGAAA TGACTGGTTT AAATATTGAA GTGGACAGAA TACTGGAGAT TGCTTGTATA ATTACAGATG
GATTTTTAAC CAAAACAGTG GAGGGTCCCG ATTTGGTCAT TCATCAAACT AAGGAGTGCC TTGACAGGAT GGGAGAATGG
TGTCAGAATC ATCATGCATC TAGTGGATTA ACAAAAAAGG TGCAACAGAG TACCATTAGT GAAGGAGAAG CTGAAAAGCA
GGTTATTGAA TTTGTAAGGA GATATATTAA AGTTGATTCG TACACACCTC TCTTGGCAGG AAATTCAATA TATGTTGATT
TTCAATTTCT GAAGAAATAC ATGCCAAAAT TGGCGAGTCT ATTCTCTCAT GTACTTGTTG ATGTTAGTAG TGTTAAAGCT
CTCTGCATTC GCTGGTATCC CAAAGATCAG AAGAGAGCAC CTTCAAAAGA AAACAGACAC AGAGCCATGG ATGACATTAG
AGAAAGCATT GAGGAACTTA GATACTACAA GGCAAATATT TTTAAGCCTA AGTCCAGAAA GTGATCGAGT TGCAGAGAAC
CACCGTGTGA ATGGTTATGG GCTAGTTTCC AGTTCAAGTG TAAATGGCTC GTGATTTTCG ATAGATTGTA TTGCAAAATC
ACATTTAAAT CTTCATCGGA AACCCTGATG TTTCAACAAC TCTTTCAAAA TGGAACTGTG ATTGCCTATT ACCATGTCCA
AAGAAATGTA AAATAAGTTT TACGTTTTTA 

>Vigan.03G054100.01
ATGGAAAAAC TCGCAAATTC GTTTTCAGTG TTAGAACTCG ACGCCGGCGA TAGTCACGTT CCCACCACCG CAGATAACAG
TGGCAAGGGA GTTAATCCTG ACATTGGCGT TATACCAGTA AAGAACAAGA AACAAGATCA AGAAAATGAA GTGTTTCCTT
CATGTGAATA CAAGTTACCT CTGGTGTGGA TTGACTTGGA AATGACTGGT TTAAATATTG AAGTGGACAG AATACTGGAG
ATTGCTTGTA TAATTACAGA TGGATTTTTA ACCAAAACAG TGGAGGGTCC CGATTTGGTC ATTCATCAAA CTAAGGAGTG
CCTTGACAGG ATGGGAGAAT GGTGTCAGAA TCATCATGCA TCTAGTGGAT TAACAAAAAA GGTGCAACAG AGTACCATTA
GTGAAGGAGA AGCTGAAAAG CAGGTTATTG AATTTGTAAG GAGATATATT AAAGTTGATT CGTACACACC TCTCTTGGCA
GGAAATTCAA TATATGTTGA TTTTCAATTT CTGAAGAAAT ACATGCCAAA ATTGGCGAGT CTATTCTCTC ATGTACTTGT
TGATGTTAGT AGTGTTAAAG CTCTCTGCAT TCGCTGGTAT CCCAAAGATC AGAAGAGAGC ACCTTCAAAA GAAAACAGAC
ACAGAGCCAT GGATGACATT AGAGAAAGCA TTGAGGAACT TAGATACTAC AAGGCAAATA TTTTTAAGCC TAAGTCCAGA
AAGTGA

>Vigan.03G054100.01
MEKLANSFSV LELDAGDSHV PTTADNSGKG VNPDIGVIPV KNKKQDQENE VFPSCEYKLP LVWIDLEMTG LNIEVDRILE
IACIITDGFL TKTVEGPDLV IHQTKECLDR MGEWCQNHHA SSGLTKKVQQ STISEGEAEK QVIEFVRRYI KVDSYTPLLA
GNSIYVDFQF LKKYMPKLAS LFSHVLVDVS SVKALCIRWY PKDQKRAPSK ENRHRAMDDI RESIEELRYY KANIFKPKSR
K*