GBrowse Details

Vigan.03G055100.01

Basic Information:
Name: Vigan.03G055100.01
Multiple alignment
Variant Information
Position: Chr03:5202414..5207042 (+ strand)
Length: 4629
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIR0, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Leucine-rich repeat (IPR001611)
Leucine-rich repeat-containing N-terminal, type 2 (IPR013210)
Leucine rich repeat 4 (IPR025875)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:105.95,81.83,125.46,118.67,131.17,245.35,133.75,119.37
Arabidopsis thaliana homolog: AT5G21090.1
Automatic updates:
Name: NM_001254465 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100786387), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:5202414..5202671 (+ strand)
Length: 258
Type: five_prime_UTR
Position: Chr03:5202672..5202895 (+ strand)
Length: 224
Type: CDS
Position: Chr03:5203838..5203909 (+ strand)
Length: 72
Type: CDS
Position: Chr03:5204857..5205000 (+ strand)
Length: 144
Type: CDS
Position: Chr03:5205914..5205985 (+ strand)
Length: 72
Type: CDS
Position: Chr03:5206088..5206159 (+ strand)
Length: 72
Type: CDS
Position: Chr03:5206750..5206822 (+ strand)
Length: 73
Type: CDS
Position: Chr03:5206823..5207042 (+ strand)
Length: 220
Type: three_prime_UTR


>Vigan.03G055100.01
TGAAAAACTA AAACTATATA GTATATTATA AAATCGAAGC TCGCCATGTT TTACTGCTCC GTGTTATTCC CAAAGCCGAT
ACTTCCTTTT CAAGTCTTTT CTCTTTCTCT CTCACAAGAT TCTTCCCTCT TCCTTCCTCT CTCTCTAGAA CTTCGTCCTT
TGCTTTCGTT CTTCTCTGCG CGGTCGTTGC GAACCGACGA ATAAGAGCGA TAACCCTAAC ACGGCAGTAG AGGTGTACGG
TTGAAGCTCA GATCAGCCAT GGCAGCAGCA ACCTGCACTT CCATGCGGTT CCTACTTTCA GTTTCCCTAA CCCTAACTCT
GCTCCGCCTC GGCGCCTCCA ATTCCGAAGG CGATGCGCTG TACACGCTCA AACGGAGCCT GTCGGACCCG GACAACGTCC
TTCAGAGTTG GGATCCCACG CTCGTGAGTC CGTGTACTTG GTTCCACGTC ACCTGCAACC AGGACAACCG AGTCACTCGA
GTGGATCTTG GTAACTCTAA CCTATCTGGA CATTTGGTTC CGGAACTTGG GAAGCTGGAG CATCTGCAGT ATCTTGAGTT
GTACAAAAAC AACATTCAAG GAACTATTCC TCCAGAACTT GGAAACCTAA AGAGTCTAGT TAGCTTGGAC CTGTACAACA
ACAACATATC AGGCACCATT CCGTCTTCAT TGGGGAAATT GAAGAATCTT GTCTTTTTAC GACTAAATGA CAACCGACTT
ACTGGCCCTA TCCCCAAGGA TCTTGCTGCT GTTTCAAGCC TTAAAGTAGT GGATGTCTCC AACAATGATT TATGCGGTAC
AATTCCTACC TCTGGGCCAT TCGAGCATAT TCCATTGAAT AACTTTGAGA ATAACCCTCG TTTGGAAGGT CCAGAGTTGT
TGGGTCTTGT AAGTTACGAT ACAAACTGCT CGTGAATAAG TTGATGTGGT AGGATCTCTC TCTCTATATA TATATATTCT
AAAATTCAAG TGTATTACCT CATAGTGTAA TGGGCAGTGG TAAATGTAAT CTCTGGTATA TGTAAATTTA CATACTGAAG
AGCATTGGCA TTTGTAACAA TATTATGATC TGACAATGAT TTTGAGACTT GAATATCATC TATTTTATGT AATACTAGAA
AAATTCGACT TGGTT

>Vigan.03G055100.01
ATGGCAGCAG CAACCTGCAC TTCCATGCGG TTCCTACTTT CAGTTTCCCT AACCCTAACT CTGCTCCGCC TCGGCGCCTC
CAATTCCGAA GGCGATGCGC TGTACACGCT CAAACGGAGC CTGTCGGACC CGGACAACGT CCTTCAGAGT TGGGATCCCA
CGCTCGTGAG TCCGTGTACT TGGTTCCACG TCACCTGCAA CCAGGACAAC CGAGTCACTC GAGTGGATCT TGGTAACTCT
AACCTATCTG GACATTTGGT TCCGGAACTT GGGAAGCTGG AGCATCTGCA GTATCTTGAG TTGTACAAAA ACAACATTCA
AGGAACTATT CCTCCAGAAC TTGGAAACCT AAAGAGTCTA GTTAGCTTGG ACCTGTACAA CAACAACATA TCAGGCACCA
TTCCGTCTTC ATTGGGGAAA TTGAAGAATC TTGTCTTTTT ACGACTAAAT GACAACCGAC TTACTGGCCC TATCCCCAAG
GATCTTGCTG CTGTTTCAAG CCTTAAAGTA GTGGATGTCT CCAACAATGA TTTATGCGGT ACAATTCCTA CCTCTGGGCC
ATTCGAGCAT ATTCCATTGA ATAACTTTGA GAATAACCCT CGTTTGGAAG GTCCAGAGTT GTTGGGTCTT GTAAGTTACG
ATACAAACTG CTCGTGA

>Vigan.03G055100.01
MAAATCTSMR FLLSVSLTLT LLRLGASNSE GDALYTLKRS LSDPDNVLQS WDPTLVSPCT WFHVTCNQDN RVTRVDLGNS
NLSGHLVPEL GKLEHLQYLE LYKNNIQGTI PPELGNLKSL VSLDLYNNNI SGTIPSSLGK LKNLVFLRLN DNRLTGPIPK
DLAAVSSLKV VDVSNNDLCG TIPTSGPFEH IPLNNFENNP RLEGPELLGL VSYDTNCS*