GBrowse Details

Vigan.03G057300.01

Basic Information:
Name: Vigan.03G057300.01
Multiple alignment
Variant Information
Position: Chr03:5440450..5448513 (+ strand)
Length: 8064
Functional Information:
Description: Similar to Rfls1 protein. [G3ECQ4, Glycine max]
GO: Biological Process: Mo-molybdopterin cofactor biosynthetic process (GO:0006777)
Biological Process: molybdopterin cofactor biosynthetic process (GO:0032324)
InterPro: Molybdopterin binding domain (IPR001453)
MoeA, N-terminal and linker domain (IPR005110)
MoeA, C-terminal, domain IV (IPR005111)
Molybdenum cofactor biosynthesis, conserved site (IPR008284)
Molybdenum cofactor synthesis (IPR020817)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:38.63,74.23,7.81,19.74,13.57,10.69,36.51,9.19
Arabidopsis thaliana homolog: AT5G20990.1
Automatic updates:
Name: NM_001255600 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max molybdopterin biosynthesis protein CNX1-like (LOC100783265), mRNA.
PubMed ID: 25886067 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:5440450..5441028 (+ strand)
Length: 579
Type: five_prime_UTR
Position: Chr03:5441029..5441308 (+ strand)
Length: 280
Type: CDS
Position: Chr03:5441619..5441749 (+ strand)
Length: 131
Type: CDS
Position: Chr03:5441926..5442027 (+ strand)
Length: 102
Type: CDS
Position: Chr03:5442168..5442251 (+ strand)
Length: 84
Type: CDS
Position: Chr03:5442808..5443035 (+ strand)
Length: 228
Type: CDS
Position: Chr03:5443219..5443397 (+ strand)
Length: 179
Type: CDS
Position: Chr03:5443480..5443584 (+ strand)
Length: 105
Type: CDS
Position: Chr03:5443752..5444060 (+ strand)
Length: 309
Type: CDS
Position: Chr03:5446094..5446251 (+ strand)
Length: 158
Type: CDS
Position: Chr03:5446343..5446449 (+ strand)
Length: 107
Type: CDS
Position: Chr03:5447037..5447093 (+ strand)
Length: 57
Type: CDS
Position: Chr03:5448168..5448380 (+ strand)
Length: 213
Type: CDS
Position: Chr03:5448381..5448513 (+ strand)
Length: 133
Type: three_prime_UTR


>Vigan.03G057300.01
TGATTTAAGA GTCTAGAACA AAATTAATTA ATAAAAAACA ATAGGGTGGG ACACTAATGG TGTAACGTGA CATGCATCGA
GTGTGGTAGT TGACGAAGAT ATGACTAGAC CCGATTTACA ACATTCTGAT GCTAATGCTC TAATTATAAT ATTTAATGAA
TCCTATTATG TTATTTTAAA TCATGAAACA AGGCATAACT ATTTTGGATA GGATTTTCCA CATAGGTCTT GCCTTACCAA
CAATAAAAAA AAAGGTATAT ATGTTTATAA TCTTTAAATT TAAATATAAA ACTAAAATTT ATTTATTACC GCTTTATTTT
GTCTTAATTA GTATCGAAAA TAAAAGGTAG CTTTTTGTAT TTGTAGTGTA GTATATAACT ACCGTGAAGA AGCACATGGT
GGTGTGTTCA TCAGCGACCC TTTGCGCCGT GAAGGGACAG TGCTGAATTG GTTGGTATAC CTTATGCTCG ATCGAACCTT
CAAATCAATC CAATTGAACA AGTGGATGAA TATAAAACTC TATCTGGTCA CATACAACAT AGTTCCCTGT TCACCATAAA
TCTTCTACTA TACGAAACTA TGATCCCCGT CACTGACGCC ATCCAAATAG TCCTTAACGC TTCGAAACGT CTTCCTCCAC
TCACTGTGCC TCTTCACGAT GCCCTAGGCA AGGTCCTCGC GCAAGACGTT CACGCTCCCG ATCCTCACCC GCCCTACGCC
GCCTCCGTCA AGGACGGCTA CGCGGTCATC GCCGCCGATG GCCCCGGCGA GTATCCAGTC GTTGCGGAAT CCAGAGCTGG
AGACGACGCT CTTGGCGTCA TTCTCTCCCC TGGAACTGTC GCTTACGTTA CTACCGGAGG ACCGATACCT GAAGGTGCTG
ATGCGGTTGT TCAGGTTGAG AATACGGAAC TTGTGAACGA TGCCTCAGAT GGGACTAAGC GGGTCAGAAT ATTGGTACAA
ACCACCAAAG GCAATGATAT ACGCCCTGTG GGAGTTGATA TTGAGAAAGG TGCAATAGTG TTGACATCTG GAGAAAGGAT
TGGTGCTTCG GAAATTGGCT TGCTTGCTAC GGTTGGTGTG ACAATGGTTG AGGTTTATCC GGCTCCAACC GTTGCTGTTC
TTTCTACTGG AGATGAGCTT GTAGAGCCAA CTACCGGGCA TCTGAGTCGT GGTCAGATTA GGGACTCTAA TCGTGCCATG
CTCCTGGCAG CTGCAGTACA GCTTCAGTGC AAAGTTCTGG ACCTTGGTAT TGCTAAGGAT GACAAAGAAT GTCTAGGAAG
GATCTGGGAT AAAGCTTTTG CTTCTGGAAT TAATATTCTT ATAACTTCAG GAGGTGTTTC AATGGGAGAC AAAGATTATA
TCAAGCCTTT GCTTGAAAAG CGAGGAAAAG TACATTTTGA CAAGGTGTTT ATTAAACCAG GCAAGCCATT TACATTTGCA
GAGATTGACT TTCAATCATC AGAAAGTAAA ATTCTAGCTT TTGGGCTACC TGGAAATCCT GTCAGTTCTG TAGTTTGCTT
CCATCTCTTT GTGGTCCCTG CAATACGCCT CCTTGCAGGG TGGACAGATC CTCATCATTT GAGGGTACAA GCTCGACTTC
AACAGCCCAT AAAGACAGAT TCATTTAGAC CCGAGTATCA TCGTGCTTCT GTTATATGGA CTGACAATGA TGGAACAGGC
AATCCAGGTT TTGTTGCTGT GAGCACTGGT CATCAGGTAA GCAGTCGGCT ACTAAGTATG AAGTCAGCTA ATGCTTTGTT
GGAGTTTCCA GCAACAGGAA GAGTAGTTTC TGCAGGGACA GCTGTTTCAG CTATCATAAT TTCTGACCTA AGAAACATGG
CTTTTGATGA GAATCATATG TCATCAGGTG CGGCATTTGC TTTGCCAGGA ATTAAATCAC AAAAAGTAAC TACTGATTCT
TCAGGGGATG CTGAAGTCAG AGTGGCTATT CTTACAGTTA GTGATACAGT TGCTATGGGG GGTGGCCCAG ATAGAAGTGG
TCCCAGGGCA GTTTCTGTTA TTAATTCGTC ATCAGAAAAG CTAGGAGGAG CAAGAGTTGT AGCAACGGCT GTTGTTCCAG
ATAATGTGGC AAAGATTCAG AACATTCTAA GAAGATGGAG TGATATTGAA CAAATGGATC TTATAATTAC TCTTGGGGGG
ACTGGCTTTA CTCCACGAGA TTTAACGCCA GAAGCTACAA AACCATTGAT TGAGAAAGAA ACACCTGGTC TTCTGTATGT
AATGATGCAA GAGAGTTTAA AGGTGACCCC GTTTGCAATG CTTTCTCGCT CCGCAGCTGG AATCAGAGGA TCAACCTTGA
TCATTAACAT GCCTGGAAAC CCTAATGCTG TTGCCGAGTG TATGGGAGCT TTACTGCCAG CGCTTAAGCA TGGTCTGAAG
CAGATCAGGG GAGACAAGAG AGAAAAGCAT CCTCGTCACG TTCCACATGT CGATGCAGTT CCTGCAGATG TTTGGGAACA
GAGTTATAGG CTATCCACTG CCGATGACGT CTCTTGTTCC TGTTGCAACT AAAGTTAATT ATATTTTCTT CTCTGTTTCA
AGGTTGTGCC CCCATGTTTT TCAAGAGAGA AGATGGTTCA GTTAGCAATC AATGTTCGAA AACACTATTT TATCAGAAAA
CTAAAATTTT GATGCGTGAC AATCC

>Vigan.03G057300.01
ATGATCCCCG TCACTGACGC CATCCAAATA GTCCTTAACG CTTCGAAACG TCTTCCTCCA CTCACTGTGC CTCTTCACGA
TGCCCTAGGC AAGGTCCTCG CGCAAGACGT TCACGCTCCC GATCCTCACC CGCCCTACGC CGCCTCCGTC AAGGACGGCT
ACGCGGTCAT CGCCGCCGAT GGCCCCGGCG AGTATCCAGT CGTTGCGGAA TCCAGAGCTG GAGACGACGC TCTTGGCGTC
ATTCTCTCCC CTGGAACTGT CGCTTACGTT ACTACCGGAG GACCGATACC TGAAGGTGCT GATGCGGTTG TTCAGGTTGA
GAATACGGAA CTTGTGAACG ATGCCTCAGA TGGGACTAAG CGGGTCAGAA TATTGGTACA AACCACCAAA GGCAATGATA
TACGCCCTGT GGGAGTTGAT ATTGAGAAAG GTGCAATAGT GTTGACATCT GGAGAAAGGA TTGGTGCTTC GGAAATTGGC
TTGCTTGCTA CGGTTGGTGT GACAATGGTT GAGGTTTATC CGGCTCCAAC CGTTGCTGTT CTTTCTACTG GAGATGAGCT
TGTAGAGCCA ACTACCGGGC ATCTGAGTCG TGGTCAGATT AGGGACTCTA ATCGTGCCAT GCTCCTGGCA GCTGCAGTAC
AGCTTCAGTG CAAAGTTCTG GACCTTGGTA TTGCTAAGGA TGACAAAGAA TGTCTAGGAA GGATCTGGGA TAAAGCTTTT
GCTTCTGGAA TTAATATTCT TATAACTTCA GGAGGTGTTT CAATGGGAGA CAAAGATTAT ATCAAGCCTT TGCTTGAAAA
GCGAGGAAAA GTACATTTTG ACAAGGTGTT TATTAAACCA GGCAAGCCAT TTACATTTGC AGAGATTGAC TTTCAATCAT
CAGAAAGTAA AATTCTAGCT TTTGGGCTAC CTGGAAATCC TGTCAGTTCT GTAGTTTGCT TCCATCTCTT TGTGGTCCCT
GCAATACGCC TCCTTGCAGG GTGGACAGAT CCTCATCATT TGAGGGTACA AGCTCGACTT CAACAGCCCA TAAAGACAGA
TTCATTTAGA CCCGAGTATC ATCGTGCTTC TGTTATATGG ACTGACAATG ATGGAACAGG CAATCCAGGT TTTGTTGCTG
TGAGCACTGG TCATCAGGTA AGCAGTCGGC TACTAAGTAT GAAGTCAGCT AATGCTTTGT TGGAGTTTCC AGCAACAGGA
AGAGTAGTTT CTGCAGGGAC AGCTGTTTCA GCTATCATAA TTTCTGACCT AAGAAACATG GCTTTTGATG AGAATCATAT
GTCATCAGGT GCGGCATTTG CTTTGCCAGG AATTAAATCA CAAAAAGTAA CTACTGATTC TTCAGGGGAT GCTGAAGTCA
GAGTGGCTAT TCTTACAGTT AGTGATACAG TTGCTATGGG GGGTGGCCCA GATAGAAGTG GTCCCAGGGC AGTTTCTGTT
ATTAATTCGT CATCAGAAAA GCTAGGAGGA GCAAGAGTTG TAGCAACGGC TGTTGTTCCA GATAATGTGG CAAAGATTCA
GAACATTCTA AGAAGATGGA GTGATATTGA ACAAATGGAT CTTATAATTA CTCTTGGGGG GACTGGCTTT ACTCCACGAG
ATTTAACGCC AGAAGCTACA AAACCATTGA TTGAGAAAGA AACACCTGGT CTTCTGTATG TAATGATGCA AGAGAGTTTA
AAGGTGACCC CGTTTGCAAT GCTTTCTCGC TCCGCAGCTG GAATCAGAGG ATCAACCTTG ATCATTAACA TGCCTGGAAA
CCCTAATGCT GTTGCCGAGT GTATGGGAGC TTTACTGCCA GCGCTTAAGC ATGGTCTGAA GCAGATCAGG GGAGACAAGA
GAGAAAAGCA TCCTCGTCAC GTTCCACATG TCGATGCAGT TCCTGCAGAT GTTTGGGAAC AGAGTTATAG GCTATCCACT
GCCGATGACG TCTCTTGTTC CTGTTGCAAC TAA

>Vigan.03G057300.01
MIPVTDAIQI VLNASKRLPP LTVPLHDALG KVLAQDVHAP DPHPPYAASV KDGYAVIAAD GPGEYPVVAE SRAGDDALGV
ILSPGTVAYV TTGGPIPEGA DAVVQVENTE LVNDASDGTK RVRILVQTTK GNDIRPVGVD IEKGAIVLTS GERIGASEIG
LLATVGVTMV EVYPAPTVAV LSTGDELVEP TTGHLSRGQI RDSNRAMLLA AAVQLQCKVL DLGIAKDDKE CLGRIWDKAF
ASGINILITS GGVSMGDKDY IKPLLEKRGK VHFDKVFIKP GKPFTFAEID FQSSESKILA FGLPGNPVSS VVCFHLFVVP
AIRLLAGWTD PHHLRVQARL QQPIKTDSFR PEYHRASVIW TDNDGTGNPG FVAVSTGHQV SSRLLSMKSA NALLEFPATG
RVVSAGTAVS AIIISDLRNM AFDENHMSSG AAFALPGIKS QKVTTDSSGD AEVRVAILTV SDTVAMGGGP DRSGPRAVSV
INSSSEKLGG ARVVATAVVP DNVAKIQNIL RRWSDIEQMD LIITLGGTGF TPRDLTPEAT KPLIEKETPG LLYVMMQESL
KVTPFAMLSR SAAGIRGSTL IINMPGNPNA VAECMGALLP ALKHGLKQIR GDKREKHPRH VPHVDAVPAD VWEQSYRLST
ADDVSCSCCN *