GBrowse Details

Vigan.03G061900.01

Basic Information:
Name: Vigan.03G061900.01
Multiple alignment
Variant Information
Position: Chr03:6027725..6031680 (- strand)
Length: 3956
Functional Information:
Description: Similar to Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1. [XP_007018621.1, Theobroma cacao]
InterPro: Alkaline phosphatase D-related (IPR018946)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.11,2.38,1.76,2.32,1.50,0.73,3.72,3.29
Arabidopsis thaliana homolog: AT5G42370.2
Automatic updates:
Name: NM_001317617 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100801460 (LOC100801460), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:6027725..6028117 (- strand)
Length: 393
Type: three_prime_UTR
Position: Chr03:6028118..6028200 (- strand)
Length: 83
Type: CDS
Position: Chr03:6028325..6028579 (- strand)
Length: 255
Type: CDS
Position: Chr03:6028663..6028891 (- strand)
Length: 229
Type: CDS
Position: Chr03:6029030..6029137 (- strand)
Length: 108
Type: CDS
Position: Chr03:6029324..6029464 (- strand)
Length: 141
Type: CDS
Position: Chr03:6029707..6029767 (- strand)
Length: 61
Type: CDS
Position: Chr03:6030035..6030156 (- strand)
Length: 122
Type: CDS
Position: Chr03:6030310..6030537 (- strand)
Length: 228
Type: CDS
Position: Chr03:6031414..6031581 (- strand)
Length: 168
Type: CDS
Position: Chr03:6031582..6031680 (- strand)
Length: 99
Type: five_prime_UTR


>Vigan.03G061900.01
GTTTCATTTT GTGTCTGCCA TTGGTCTCAA ATTGTGAGAA AGTTCCCTTT TTATGATCTC TGAGAAAGAA CTGAATTCGA
AGTCGTGGTT TTTGCGCAAA TGGGTATCGA TCAACGTCTG CGGCGGAGCC GGTGGTGGAA CGCCGTTGTT TTTATCGGAA
TGGTCAGCTT TACAGTAACC GTTACCAGTT CCGACAGTCA CGAGAAGCAG GAACAAGTGG TCTCCCGAAT TGCCTTCGGA
TCATGCTCCA ACCAGAGCGC TCCTCAGCCC ATTTGGGATG CAGTGGCGGA CTTCCGTCCC CAAATTTTTA TATGGCTGGG
TGATAACATT TACGGGGACT CCAAACGCCC TTTCAAAGTA TTTGGACGGG AAAGGACTGT TGGGCCATGG AAGAATGTTC
CACGATTTGT TCCTTCTTCT GAGCAGGAAA TGAAGGCTAG ATATGAAAAG GCTAAGTCTA GTCCTGGCTA TATTCGACTT
CATCAGAATG CTAAGGTTAT TGGTACATGG GATGATCACG ATTATGGATT AAATGATGCA GGAAAAGAAT TTCAAGGAAA
AATCACCAAC CAGAAGTTGC TTCTTGATTT CTTGGATGAA CCTCAAGATA GCCCACGGCG GAAACAGGCT GGTGTATATG
TCTCATATAC GTATGGTCCT GTAGGTAGAG ATATCAAGAT TGTACTCTTA GATACTAGAT ATCACAGAGA CCCTGTAGGA
AGTGATGGTA CCATTTTGGG GAATTCACAG TGGTTGTGGT TGGAGAAAGA GATCAAGGGT CCACCAACGG CTCTTACCAT
AATTGGATCT TCTATTCAGG TTATATCAAA TCTTTCGGCA ACCATTCATC CATTGTTTGC AATGGAGTCA TGGGGTCGTT
TTCCAAAGGA AAGAGACCGG CTATTTAAAT TAATAGCTGA TAGTAAGAGA GCTGGAGTAT TTTTTCTCAG TGGAGATGTG
CACTTTGGGG AAATCACGAG ATATGATTGT GCTGTGGGCT ATCCACTTTA TGATGTAACC TCAAGTGGGG TTACTCAATC
AGTCGAGGAA GTTGTCCCAC CTTTCCTGCG TTCTTTTGTG AGATTTGTTG CATTGTTGAC CCCATCTACA ATGAGAGTAA
AGGGCCAACA CTGCAGATAC AAATCTTGTA TATATGGTCA GCCAAACTTT GGAACCATTG AAATAGATTG GGACTCTCAC
CCAGTGACTC TCAAGTTAAA AGTGAGGGAC AAAGAGAGCA TCATGGTTAC AGGTGTTGAT GTTTCATTGA CGGAATTGCA
ATCATCAAAT TCAGAGAGTT TTGACAGAGA AAAGGCAGGT CATGATAATC AAAAGCATTG CACCCTTGAA GTTAGTCTGC
CATGGTTTGT AAGATATCGC CTAGCGATCT TGTTCTTTTG CACCTTAATT GTGTTTCTTG TTGCATTCCT AGTGCTAGTT
TACACCTGCT TCAGACTTTT CAGACTAGAA GGCTGCAAAA GAAAGCACGA TTGATGCAAG TAGATTCATG CACAGTCAGC
AAAAGGGAGC ATGTCCTATC TCTTCTCCTT TTTTGTAGAT TTAACATCTG TGGTTGTAGG TGAATAAGAT GTATAGAATT
CTTCTACTGT TTCTACTAAT CAATCCTTAA TCAATATGAA CAATTCGGGT GTATTTGAGT TACATTTTCA GAAATTGTTT
AGTTTTCAAA ATATAGCTAA GCAAGGTTGT TCAGATAGAT AGCTTGTGAA GGGTGGTGCA AGATACAAAA CTGGAATTGA
GGGGAGAGGT TTGTTGAACT AGATGGAAAC AGAAATATAT GAGAAAAATC TCCCTACTGT TTTTGTTTTG GATGAGAATT
TGATTGCTGA ATGGTGAAAA ATTATTTTGG AAACAGTTTT TTTGAAA

>Vigan.03G061900.01
ATGGGTATCG ATCAACGTCT GCGGCGGAGC CGGTGGTGGA ACGCCGTTGT TTTTATCGGA ATGGTCAGCT TTACAGTAAC
CGTTACCAGT TCCGACAGTC ACGAGAAGCA GGAACAAGTG GTCTCCCGAA TTGCCTTCGG ATCATGCTCC AACCAGAGCG
CTCCTCAGCC CATTTGGGAT GCAGTGGCGG ACTTCCGTCC CCAAATTTTT ATATGGCTGG GTGATAACAT TTACGGGGAC
TCCAAACGCC CTTTCAAAGT ATTTGGACGG GAAAGGACTG TTGGGCCATG GAAGAATGTT CCACGATTTG TTCCTTCTTC
TGAGCAGGAA ATGAAGGCTA GATATGAAAA GGCTAAGTCT AGTCCTGGCT ATATTCGACT TCATCAGAAT GCTAAGGTTA
TTGGTACATG GGATGATCAC GATTATGGAT TAAATGATGC AGGAAAAGAA TTTCAAGGAA AAATCACCAA CCAGAAGTTG
CTTCTTGATT TCTTGGATGA ACCTCAAGAT AGCCCACGGC GGAAACAGGC TGGTGTATAT GTCTCATATA CGTATGGTCC
TGTAGGTAGA GATATCAAGA TTGTACTCTT AGATACTAGA TATCACAGAG ACCCTGTAGG AAGTGATGGT ACCATTTTGG
GGAATTCACA GTGGTTGTGG TTGGAGAAAG AGATCAAGGG TCCACCAACG GCTCTTACCA TAATTGGATC TTCTATTCAG
GTTATATCAA ATCTTTCGGC AACCATTCAT CCATTGTTTG CAATGGAGTC ATGGGGTCGT TTTCCAAAGG AAAGAGACCG
GCTATTTAAA TTAATAGCTG ATAGTAAGAG AGCTGGAGTA TTTTTTCTCA GTGGAGATGT GCACTTTGGG GAAATCACGA
GATATGATTG TGCTGTGGGC TATCCACTTT ATGATGTAAC CTCAAGTGGG GTTACTCAAT CAGTCGAGGA AGTTGTCCCA
CCTTTCCTGC GTTCTTTTGT GAGATTTGTT GCATTGTTGA CCCCATCTAC AATGAGAGTA AAGGGCCAAC ACTGCAGATA
CAAATCTTGT ATATATGGTC AGCCAAACTT TGGAACCATT GAAATAGATT GGGACTCTCA CCCAGTGACT CTCAAGTTAA
AAGTGAGGGA CAAAGAGAGC ATCATGGTTA CAGGTGTTGA TGTTTCATTG ACGGAATTGC AATCATCAAA TTCAGAGAGT
TTTGACAGAG AAAAGGCAGG TCATGATAAT CAAAAGCATT GCACCCTTGA AGTTAGTCTG CCATGGTTTG TAAGATATCG
CCTAGCGATC TTGTTCTTTT GCACCTTAAT TGTGTTTCTT GTTGCATTCC TAGTGCTAGT TTACACCTGC TTCAGACTTT
TCAGACTAGA AGGCTGCAAA AGAAAGCACG ATTGA

>Vigan.03G061900.01
MGIDQRLRRS RWWNAVVFIG MVSFTVTVTS SDSHEKQEQV VSRIAFGSCS NQSAPQPIWD AVADFRPQIF IWLGDNIYGD
SKRPFKVFGR ERTVGPWKNV PRFVPSSEQE MKARYEKAKS SPGYIRLHQN AKVIGTWDDH DYGLNDAGKE FQGKITNQKL
LLDFLDEPQD SPRRKQAGVY VSYTYGPVGR DIKIVLLDTR YHRDPVGSDG TILGNSQWLW LEKEIKGPPT ALTIIGSSIQ
VISNLSATIH PLFAMESWGR FPKERDRLFK LIADSKRAGV FFLSGDVHFG EITRYDCAVG YPLYDVTSSG VTQSVEEVVP
PFLRSFVRFV ALLTPSTMRV KGQHCRYKSC IYGQPNFGTI EIDWDSHPVT LKLKVRDKES IMVTGVDVSL TELQSSNSES
FDREKAGHDN QKHCTLEVSL PWFVRYRLAI LFFCTLIVFL VAFLVLVYTC FRLFRLEGCK RKHD*