GBrowse Details

Vigan.03G063500.01

Basic Information:
Name: Vigan.03G063500.01
Multiple alignment
Variant Information
Position: Chr03:6183692..6187042 (- strand)
Length: 3351
Functional Information:
Description: Similar to Uncharacterized protein. [V7B6Z5, Phaseolus vulgaris]
GO: Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: Phosphodiesterase MJ0936 (IPR000979)
Calcineurin-like phosphoesterase superfamily domain (IPR024654)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:51.42,28.84,35.55,37.37,47.90,32.90,42.83,37.82
Arabidopsis thaliana homolog: AT3G47810.2
Automatic updates:
Name: NM_001251786 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max vacuolar sorting protein (LOC100306173), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:6183692..6184015 (- strand)
Length: 324
Type: three_prime_UTR
Position: Chr03:6184016..6184318 (- strand)
Length: 303
Type: CDS
Position: Chr03:6185312..6185449 (- strand)
Length: 138
Type: CDS
Position: Chr03:6186373..6186504 (- strand)
Length: 132
Type: CDS
Position: Chr03:6186505..6187042 (- strand)
Length: 538
Type: five_prime_UTR


>Vigan.03G063500.01
TAAAGTATTC TTCCTAGCTG CTTTATGGTG TTCAGCCAGC AGATATTCCA TAGTGGTTTC TTTATGTGCT GAGAGAATGT
TTAAGCTTTT CTTTGTTAAT TATCTTGCTC AAGTTGTTAT AGGCTTGTTT TGCTTTCATT CTTGTTCAGG AGGATATCTT
ATCCTCTCTT ATAATACATG TTCCTCTGTC CTCAAAAATT TTCTTTTTTC CACATAAGAT GTGGGATAGT TAGCCCCCTG
GACACAGGTC AAGCGATTGG CATGGGTTGG TATTTGGGCT GTTGTAATAA AATATAACGA TAGAAAAAGG ATTTATTGAT
TGATAAGAGA TTTGATGAAG TTGTGGATAG GTTTTCATTC TCTCTTCAAA GCAGGTTATA TTTTAGCAAA CTAACGTTGA
TATGAATTTC TGATTACCGC AATTGGTAAA TTCTGTTCGA TAAATTGTCT TAGCAGTTAA TAACTGTTTC TTTATATATG
GGCAATTGAT TGTTTCAGCA GGTTCCCCGA GTACACTTTT GGTTTTTGAT TCTTGAGGAT GGTGCTTGTT TTAGCCCTGG
GGGATTTGCA CATACCCCAC AGGGCACCTG ATCTTCCTGC AAAGTTCAAA TCCATGCTTG TCCCTGGCAA GATCCAACAC
ATAATTTGTA CTGGAAATTT ATGTGTTAAA GAAATTCATG ACTACTTAAA GACTCTTTGT CCAGACTTGC ATATAACCCG
CGGTGAGTAT GATGAAGAGA CGAAATATCC AGAGACCAAA ACACTAACCA TTGGCCAATT TAAGCTCGGA CTATGCCATG
GTCATCAGGT TATTCCATGG GGAGACCTAG ACTCACTGGC AATGCTACAG AGGCAGCTGG ATGTAGACAT CCTTGTCACA
GGTCACACCC ATCAATTTAC AGCTTACAAA CACGAGGGAG GTGTGGTTAT AAATCCAGGT TCTGCAACAG GTGCCTACAG
CAGTATCACT TATGACGTGA ACCCAAGCTT TGTCCTTATG GATATCGATG GTCTGCGAGT TGTGGTTTAT GTATATGAAC
TTATCGATGG AGAGGTTAAG GTTGATAAGA TTGATTTTAA GAAAACAACT ACCAGCCACT CTGCCCATTA AACACTAGGA
TTTTGGACCT GATCTCTTTT ATCTTTCACT CATTTTGTTG TTTAGTTTTT TTTTTCCTCG TTCAAACTTT TCAAGGGTGC
ACTGCTTTTA GTTTTATTTT TTGTTTTTTA TGTACACTTG TATTTGGCCA TGTCATAGGA TTCTTAGGCT TTGATTAATT
TGTGATCTGT GCCAAAACTT AATGACTTAT TAATCAGTAA CAGCTTTGTG TATTACTCGT CTTACCAGAA ATTGGTTCAG
AGCCAGAGAT CTTGGTTTTG TTATTTCCCC CTATGATTTT AGTCTCTAGA TTTCAGAAAA TTCGCAATAT TAATC

>Vigan.03G063500.01
ATGGTGCTTG TTTTAGCCCT GGGGGATTTG CACATACCCC ACAGGGCACC TGATCTTCCT GCAAAGTTCA AATCCATGCT
TGTCCCTGGC AAGATCCAAC ACATAATTTG TACTGGAAAT TTATGTGTTA AAGAAATTCA TGACTACTTA AAGACTCTTT
GTCCAGACTT GCATATAACC CGCGGTGAGT ATGATGAAGA GACGAAATAT CCAGAGACCA AAACACTAAC CATTGGCCAA
TTTAAGCTCG GACTATGCCA TGGTCATCAG GTTATTCCAT GGGGAGACCT AGACTCACTG GCAATGCTAC AGAGGCAGCT
GGATGTAGAC ATCCTTGTCA CAGGTCACAC CCATCAATTT ACAGCTTACA AACACGAGGG AGGTGTGGTT ATAAATCCAG
GTTCTGCAAC AGGTGCCTAC AGCAGTATCA CTTATGACGT GAACCCAAGC TTTGTCCTTA TGGATATCGA TGGTCTGCGA
GTTGTGGTTT ATGTATATGA ACTTATCGAT GGAGAGGTTA AGGTTGATAA GATTGATTTT AAGAAAACAA CTACCAGCCA
CTCTGCCCAT TAA

>Vigan.03G063500.01
MVLVLALGDL HIPHRAPDLP AKFKSMLVPG KIQHIICTGN LCVKEIHDYL KTLCPDLHIT RGEYDEETKY PETKTLTIGQ
FKLGLCHGHQ VIPWGDLDSL AMLQRQLDVD ILVTGHTHQF TAYKHEGGVV INPGSATGAY SSITYDVNPS FVLMDIDGLR
VVVYVYELID GEVKVDKIDF KKTTTSHSAH *