GBrowse Details

Vigan.03G065000.01

Basic Information:
Name: Vigan.03G065000.01
Multiple alignment
Variant Information
Position: Chr03:6285210..6287217 (+ strand)
Length: 2008
Functional Information:
Description: Similar to 1-aminocyclopropane-1-carboxylic acid oxidase. [Q8W3Y3, Phaseolus lunatus]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.45,0.33,32.92,712.89,0.31,22.09,1.35,24.34
Arabidopsis thaliana homolog: AT1G05010.1
Automatic updates:
Name: NM_001354891 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative 1-aminocyclopropane-1-carboxylate oxidase (LOC100784455), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:6285210..6285293 (+ strand)
Length: 84
Type: five_prime_UTR
Position: Chr03:6285294..6285398 (+ strand)
Length: 105
Type: CDS
Position: Chr03:6285535..6285761 (+ strand)
Length: 227
Type: CDS
Position: Chr03:6285967..6286300 (+ strand)
Length: 334
Type: CDS
Position: Chr03:6286623..6286904 (+ strand)
Length: 282
Type: CDS
Position: Chr03:6286905..6287217 (+ strand)
Length: 313
Type: three_prime_UTR


>Vigan.03G065000.01
ACCCTCGCAA ACTCATATTT GCATAGAGTA ATAGAGAAGA GGCAGATAGA AAGAGAGAAA GAAATCGAGT TTTGAGTTTA
AAAAATGACT AACTTCCCCG TGATCAACTT TGAGAAGCTC AATGGTGAGG AGAGAAAAGA CACCATGGAG AAAATAAAAG
ATGCTTGTGA AAACTGGGGA TTCTTTGAGT TGGTGAACCA TGGCATACCC AATGACATAT TGGACACTGT GGAGAGGTTG
ACTAAAGAGC ACTACAGGAA ATGTATGGAA GAAAGGTTCA AGGAGTTAAT GGCAAGCAAA GGTCTAGAGG CTGTCCAAAC
TGAGGTCAAG GATATGGACT GGGAGAGCAC CTTCCACTTG CGTCACCTCC CTGAATCAAA CATCTCGGAG GTCCCTGATC
TCATTGATGA ATACAGGGTG GTGATGAAGG ATTTTGCTTT GAGGTTAGAA AAGCTAGCAG AGCAGCTGCT AGACTTGTTG
TGTGAGAATC TTGGTCTAGA GAAAGGGTAC CTGAAAAAGG CCTTCTATGG ATCAAGAGGA CCAACTTTTG GCACCAAGGT
TGCCAACTAC CCTCCATGCC CCAAGCCAGA GCTGGTGAAT GGTCTTCGTC CCCACACCGA TGCCGGTGGG ATTGTCCTTC
TCTTTCAAGA TGACAAGGTC AGTGGCTTAC AGCTGCTCAA AGATGACCAG TGGGTTGACG TGCCCCCTAT GCGCCACTCC
ATCGTTGTTA ACATCGGTGA TCAGCTGGAG GTGATCACTA ATGGTAAGTA CAAGAGTGTG GAGCACCGTG TGATAGCACA
AACTGATGGG ACCAGAATGT CCATAGCCTC ATTCTACAAC CCTGGCAGTG ATGCTGTCAT CTACCCTGCA CCAGAATTGT
TGGAGAAAGA GACAGCGGAT AAAGTCCAGC TCTACCCAAA ATTTGTGTTT GAGGATTACA TGAAGCTCTA TGCTAAGCTC
AAGTTCCAGG CCAAGGAGCC AAGATTTGAA GCCTTTAAAA CATCAAATTT TGGTCCAATT GCAACTGCAT AAATATGTAT
TTTTACTCTT TGGGAGAACC GATGAAAGTA GCTTATGCAC TTGTTTACCA GAAGAATATT ACGATAGCCA TAATAAAATG
TCATCATAGT GCATGTTTGG ATTTGAGTTA GAACAACGTT AAAAAACTAA TGTAATACAG TGTTCCTTTA TTATTGTGTA
CTGTAATTGG TATTTGTGTG ATGGAATTCC TAATAGAATT TTCTCAATTT TACTTCAAAC ATAAGTTATG TACGGTTGAA
GTGATTGTGA CACGAAAAAT TGGTCAACAA AAATATCAAA CTTCATAATA AAAACATAAC TACTT

>Vigan.03G065000.01
ATGACTAACT TCCCCGTGAT CAACTTTGAG AAGCTCAATG GTGAGGAGAG AAAAGACACC ATGGAGAAAA TAAAAGATGC
TTGTGAAAAC TGGGGATTCT TTGAGTTGGT GAACCATGGC ATACCCAATG ACATATTGGA CACTGTGGAG AGGTTGACTA
AAGAGCACTA CAGGAAATGT ATGGAAGAAA GGTTCAAGGA GTTAATGGCA AGCAAAGGTC TAGAGGCTGT CCAAACTGAG
GTCAAGGATA TGGACTGGGA GAGCACCTTC CACTTGCGTC ACCTCCCTGA ATCAAACATC TCGGAGGTCC CTGATCTCAT
TGATGAATAC AGGGTGGTGA TGAAGGATTT TGCTTTGAGG TTAGAAAAGC TAGCAGAGCA GCTGCTAGAC TTGTTGTGTG
AGAATCTTGG TCTAGAGAAA GGGTACCTGA AAAAGGCCTT CTATGGATCA AGAGGACCAA CTTTTGGCAC CAAGGTTGCC
AACTACCCTC CATGCCCCAA GCCAGAGCTG GTGAATGGTC TTCGTCCCCA CACCGATGCC GGTGGGATTG TCCTTCTCTT
TCAAGATGAC AAGGTCAGTG GCTTACAGCT GCTCAAAGAT GACCAGTGGG TTGACGTGCC CCCTATGCGC CACTCCATCG
TTGTTAACAT CGGTGATCAG CTGGAGGTGA TCACTAATGG TAAGTACAAG AGTGTGGAGC ACCGTGTGAT AGCACAAACT
GATGGGACCA GAATGTCCAT AGCCTCATTC TACAACCCTG GCAGTGATGC TGTCATCTAC CCTGCACCAG AATTGTTGGA
GAAAGAGACA GCGGATAAAG TCCAGCTCTA CCCAAAATTT GTGTTTGAGG ATTACATGAA GCTCTATGCT AAGCTCAAGT
TCCAGGCCAA GGAGCCAAGA TTTGAAGCCT TTAAAACATC AAATTTTGGT CCAATTGCAA CTGCATAA

>Vigan.03G065000.01
MTNFPVINFE KLNGEERKDT MEKIKDACEN WGFFELVNHG IPNDILDTVE RLTKEHYRKC MEERFKELMA SKGLEAVQTE
VKDMDWESTF HLRHLPESNI SEVPDLIDEY RVVMKDFALR LEKLAEQLLD LLCENLGLEK GYLKKAFYGS RGPTFGTKVA
NYPPCPKPEL VNGLRPHTDA GGIVLLFQDD KVSGLQLLKD DQWVDVPPMR HSIVVNIGDQ LEVITNGKYK SVEHRVIAQT
DGTRMSIASF YNPGSDAVIY PAPELLEKET ADKVQLYPKF VFEDYMKLYA KLKFQAKEPR FEAFKTSNFG PIATA*