GBrowse Details

Vigan.03G066400.01

Basic Information:
Name: Vigan.03G066400.01
Multiple alignment
Variant Information
Position: Chr03:6440215..6444111 (+ strand)
Length: 3897
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIH4, Glycine max]
GO: Biological Process: glycerol ether metabolic process (GO:0006662)
Biological Process: cell redox homeostasis (GO:0045454)
Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
Molecular Function: isomerase activity (GO:0016853)
InterPro: Thioredoxin (IPR005746)
Disulphide isomerase (IPR005788)
Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:28.93,48.98,46.54,28.90,89.00,186.57,38.26,73.43
Arabidopsis thaliana homolog: AT1G04980.1, AT2G32920.1
Automatic updates:
Name: NM_001249647 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein disulfide isomerse like protein (PDIM-1), mRNA.
PubMed ID: 18167147 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:6440215..6440495 (+ strand)
Length: 281
Type: five_prime_UTR
Position: Chr03:6440496..6440633 (+ strand)
Length: 138
Type: CDS
Position: Chr03:6440837..6440995 (+ strand)
Length: 159
Type: CDS
Position: Chr03:6441637..6441750 (+ strand)
Length: 114
Type: CDS
Position: Chr03:6442185..6442342 (+ strand)
Length: 158
Type: CDS
Position: Chr03:6442439..6442538 (+ strand)
Length: 100
Type: CDS
Position: Chr03:6442744..6442920 (+ strand)
Length: 177
Type: CDS
Position: Chr03:6443126..6443271 (+ strand)
Length: 146
Type: CDS
Position: Chr03:6443448..6443594 (+ strand)
Length: 147
Type: CDS
Position: Chr03:6443685..6443859 (+ strand)
Length: 175
Type: CDS
Position: Chr03:6443860..6444111 (+ strand)
Length: 252
Type: three_prime_UTR


>Vigan.03G066400.01
GTTTTATTTT ATATTATAAT TATATACCAA TCTTCTGTCT AAAAGTAATT TACTTTTATC ATAAAAAAGA GAATATTTCT
GAACATTAAT CAAATTCGTT ATTTGGACTT TGAAACGAAG AAATAAAATT GATTTGCCAA CACGAGTGTC TGACGTGTAA
GTATATAATT GGCGGACACA CGTAGCAATA GAAAGTACTC GAACAGACAA AACAAACTAA GAAGGGTTCT TTCTTCCTTG
CGTAGATTCA GAGTGCAAAG AGTGAGAGAA AGACAGTACC AATGTCTCAA TTTCGAACAC CATTTTTCGT TTCATTTCCT
CTTTTGCTAA TCATCTTCAA CCTTGCCCCT TCTTCCTACG CACTCTATGG AGCATCCTCG CCCGTGCTTC AACTCACACC
CTCCAACTTC AAGTCCAAGG TTCTGAATTC AAATGGAGTT GTTCTCGTTG AATTCTTTGC TCCATGGTGT GGACACTGTC
AGGCTCTGAC TCCGATATGG GAGAAGGCAG CTACTGTGTT GAAGGGTGTG GTTACTGTGG CAGCACTTGA TGCTGATGCT
CACTCGTCTC TGGCTCAGGA ATATGGAATC AGAGGATTTC CAACTATAAA AGTGTTTGCT CCAGGAAAGC CACCGGTTGA
TTACCAAGGA GCCAGAGATG TCAAACCAAT TGCTGAATTT GCACTTCAAC AGGTAAAGGC TCTTTTGAAG GAGCGGTTAA
GTGGAAAAGC AACAGGGGGT TCAAATGAAA AGACAGAAAC CAGTTCTTCA GTAGAATTGA ACTCTGGAAA CTTTGATGAA
TTGGTCCTCA AGAGCAAAGA ACTCTGGATT GTGGAATTTT TTGCACCTTG GTGTGGACAT TGTAAAAAGT TGGCTCCTGA
GTGGAAGAAA GCATCCAATA ATTTGAAAGG AAAGGTTAAA CTGGGCCATG TTGACTGTGA TGCCGAAAAG TCACTAATGA
GCAGGTTCAA AGTCCAAGGA TTCCCAACAA TCTTGGTATT TGGTGCTGAT AAAGATAGTC CTATTCCTTA TGAAGGTGCA
AGAACCGCCG CAGCTATTGA ATCATTTGCA TTAGAGCAGC TGGAAACAAA TGTTGCTCCT CCAGAAGTGA CAGAGATACA
CAGTCCAGAT GTTTTGGAAG AGAAATGTGG TACTGCCGCA ATCTGTTTTG TTGCCTTCCT TCCTGACATT TTGGATTCCA
AGGCTGAGGG AAGGAACAGA TATCTTCAGC AATTATTATC AGTTGCAGAA AAGTTTAAAA GAAGTCCATA CAGCTATGTC
TGGGTAGCTG CAGGGAAGCA GCTGGATCTT GAGAAGCAAG TGGGTGTTGG TGGATATGGT TATCCAGCTT TAGTAGCCCT
TAACCTTAAG AAAGCTGTTT ATGCTCCTCT CAAGAGTGCT TTTGAACTTG ACCAAATTAT ACAATTTGTG AAAGATGCTG
GACGTGGAGG CAAAGGGAAT TTGCCCCTGC AAAGCACTCC GACCATTGTA AAGACAGAAC CATGGGATGG AAAAGATGGA
GAAATAATTG AGGAGGATGA ATTTTCACTT GAAGAATTAA TGGGGGAAGA TGCTTCAAAC AAGGACGAGC TATGATCAAT
TGAGAAGGAA ATTATGGCAA ATTAAAATTT TCAACCACTG AATTTTACGT TACAGGCAAT ATGTTTCTCA TGATGATTGT
GATCACTGTT CTGTTTTACC ATGTTACAAG TTAAAGACCA GTCTAGTGAT GTGTGATCTT ATGAGGATTT TGAAATGTTC
AGTGGTACTG ATATTTATCC AGGGAAAATG TCATCGATGT TTTTATTTTA CCTATCAATA AGCATTGAGC TAACAGGTAC
AACGTTT

>Vigan.03G066400.01
ATGTCTCAAT TTCGAACACC ATTTTTCGTT TCATTTCCTC TTTTGCTAAT CATCTTCAAC CTTGCCCCTT CTTCCTACGC
ACTCTATGGA GCATCCTCGC CCGTGCTTCA ACTCACACCC TCCAACTTCA AGTCCAAGGT TCTGAATTCA AATGGAGTTG
TTCTCGTTGA ATTCTTTGCT CCATGGTGTG GACACTGTCA GGCTCTGACT CCGATATGGG AGAAGGCAGC TACTGTGTTG
AAGGGTGTGG TTACTGTGGC AGCACTTGAT GCTGATGCTC ACTCGTCTCT GGCTCAGGAA TATGGAATCA GAGGATTTCC
AACTATAAAA GTGTTTGCTC CAGGAAAGCC ACCGGTTGAT TACCAAGGAG CCAGAGATGT CAAACCAATT GCTGAATTTG
CACTTCAACA GGTAAAGGCT CTTTTGAAGG AGCGGTTAAG TGGAAAAGCA ACAGGGGGTT CAAATGAAAA GACAGAAACC
AGTTCTTCAG TAGAATTGAA CTCTGGAAAC TTTGATGAAT TGGTCCTCAA GAGCAAAGAA CTCTGGATTG TGGAATTTTT
TGCACCTTGG TGTGGACATT GTAAAAAGTT GGCTCCTGAG TGGAAGAAAG CATCCAATAA TTTGAAAGGA AAGGTTAAAC
TGGGCCATGT TGACTGTGAT GCCGAAAAGT CACTAATGAG CAGGTTCAAA GTCCAAGGAT TCCCAACAAT CTTGGTATTT
GGTGCTGATA AAGATAGTCC TATTCCTTAT GAAGGTGCAA GAACCGCCGC AGCTATTGAA TCATTTGCAT TAGAGCAGCT
GGAAACAAAT GTTGCTCCTC CAGAAGTGAC AGAGATACAC AGTCCAGATG TTTTGGAAGA GAAATGTGGT ACTGCCGCAA
TCTGTTTTGT TGCCTTCCTT CCTGACATTT TGGATTCCAA GGCTGAGGGA AGGAACAGAT ATCTTCAGCA ATTATTATCA
GTTGCAGAAA AGTTTAAAAG AAGTCCATAC AGCTATGTCT GGGTAGCTGC AGGGAAGCAG CTGGATCTTG AGAAGCAAGT
GGGTGTTGGT GGATATGGTT ATCCAGCTTT AGTAGCCCTT AACCTTAAGA AAGCTGTTTA TGCTCCTCTC AAGAGTGCTT
TTGAACTTGA CCAAATTATA CAATTTGTGA AAGATGCTGG ACGTGGAGGC AAAGGGAATT TGCCCCTGCA AAGCACTCCG
ACCATTGTAA AGACAGAACC ATGGGATGGA AAAGATGGAG AAATAATTGA GGAGGATGAA TTTTCACTTG AAGAATTAAT
GGGGGAAGAT GCTTCAAACA AGGACGAGCT ATGA

>Vigan.03G066400.01
MSQFRTPFFV SFPLLLIIFN LAPSSYALYG ASSPVLQLTP SNFKSKVLNS NGVVLVEFFA PWCGHCQALT PIWEKAATVL
KGVVTVAALD ADAHSSLAQE YGIRGFPTIK VFAPGKPPVD YQGARDVKPI AEFALQQVKA LLKERLSGKA TGGSNEKTET
SSSVELNSGN FDELVLKSKE LWIVEFFAPW CGHCKKLAPE WKKASNNLKG KVKLGHVDCD AEKSLMSRFK VQGFPTILVF
GADKDSPIPY EGARTAAAIE SFALEQLETN VAPPEVTEIH SPDVLEEKCG TAAICFVAFL PDILDSKAEG RNRYLQQLLS
VAEKFKRSPY SYVWVAAGKQ LDLEKQVGVG GYGYPALVAL NLKKAVYAPL KSAFELDQII QFVKDAGRGG KGNLPLQSTP
TIVKTEPWDG KDGEIIEEDE FSLEELMGED ASNKDEL*