GBrowse Details

Vigan.03G067100.01

Basic Information:
Name: Vigan.03G067100.01
Multiple alignment
Variant Information
Position: Chr03:6490811..6495382 (- strand)
Length: 4572
Functional Information:
Description: Similar to Uncharacterized protein. [I1M7K0, Glycine max]
GO: Biological Process: lipid metabolic process (GO:0006629)
Molecular Function: hydrolase activity (GO:0016787)
Molecular Function: hydrolase activity, acting on ester bonds (GO:0016788)
InterPro: Lipase, GDSL (IPR001087)
SGNH hydrolase-type esterase domain (IPR013831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.02,12.53,64.17,0.02,27.94,0.25,35.83
Arabidopsis thaliana homolog: AT2G42990.1
Automatic updates:
Name: NM_001252935 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GDSL esterase/lipase At2g42990-like (LOC100809260), mRNA.
PubMed ID: 14624337 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:6490811..6491168 (- strand)
Length: 358
Type: three_prime_UTR
Position: Chr03:6491169..6491362 (- strand)
Length: 194
Type: CDS
Position: Chr03:6493638..6494127 (- strand)
Length: 490
Type: CDS
Position: Chr03:6494854..6495219 (- strand)
Length: 366
Type: CDS
Position: Chr03:6495220..6495382 (- strand)
Length: 163
Type: five_prime_UTR


>Vigan.03G067100.01
AAAAAATGGG AATAAACCCA GAAACGTGAT AACACATGCA AACCCTCATT AAAATCTGCA ACCAAACTTT CTCAGCCAAT
TAATCACACA CATCTAATTT CGAACCACTA CTATAAAACC TTCTTCTCCG TTAACTTTTC TTCCCCACCA GCAAATTATC
ATCATGACCC TCACATGCCT ATTACTGTTC TTAATCCACA TTGTGGTGGT AAAAAATTCT GAGACTAGTA ACAATGTCCC
TGCTGTCATA GTTTTCGGAG ACTCCTCTGT GGATTCTGGG AACAACAACG CCATAGCCAC TGTTCTCAAG AGCAACTTCA
AGCCCTATGG TCGTGACTTC GAAGGTGGTC GTCCTACGGG ACGCTTCTGC AACGGTCGTG TCCCTCCAGA TTTCCTTGCT
GAGGCCTTTG GCGTCAAATC AACCATTCCT GCATACTTAG ATCCTGCTTA TACCATTCAG GATTTCGCCA CCGGTGTTTG
CTTTGCCTCT GCTGGAACTG GTTATGATAA TGCTACTTCT GCTGTTCTGA ACGTGATACC ACTGTGGAAG GAACTAGAGT
TCTACAAGGA ATACCAAACC AGATTGAGAA GCCATGTTGG TGTAGAAAAA GCCAACGAGA TCATAAGCGA AGCCTTGTAT
TTGATGAGTC TAGGAACCAA CGATTTTCTT GAGAACTATT ATGTGTTCCC AACCCGAAGG ATCCACTTCA CCGTGTCACA
GTATCAAGAT TTTCTACTGA GTATTGCTGA GAATTTTGTG AGGGAATTGT ATGCACTTGG AGCACGCAAA TTGTCCATAA
CTGGTCTTAT TCCCATAGGG TGTCTACCCT TAGAGAGGGC CACCAACATT TTGGGGGACC ATGGTTGCAA CGAGGAATAC
AACAACGTTG CTTTGACCTT CAATGCCAAG CTGGAGAATG TGATAGCAAA GCTTAATAGA GAACTACCAC AGTTGAAAGC
TTTGTCGGCA AATGCATACT CTATTGTCAA TGATATCATT ACAAGACCTT CTGCTTATGG ATACGAGGTT GTAGAAAAGG
CGTGTTGTTC GACAGGAACG TTTGAGATGA GCTACTTGTG CAGTGACAAG AGTCCACTTA CATGCACAGA TGCGGAAAAG
TATGTGTTTT GGGATGCATT TCATCCTACT GAAAAGACAA ATCGCATAGT TTCAAACTAT TTGATTCCAA AGCTTAAAGC
AACCTTTCGA TGATCATCAT CATCAGCACG CATTACTTTA GAAGATTGCA CAGTCTTGCC TAGAGCAGCA TCAAAATATA
CAGATAGCTA GGTTTTATAT TGGGTTCCCA TGCATACATG TTCGACATGT ATACATTTTA TGTCTTCTGC TATGGCAAAT
AAATTAACAC CTGAATTGTA GTCATGTGCA CCACTTAGAA CCTCGTGTTG TGTTTGGTTT TTTCGCTTTT TAATTCATTC
ATGTGTGCCT GTTGGCTTTT TCATTTTACG TGATTTTGTG TTGCCAACTT TGATTAACTT GTAAACCAGA CTAAACATTG
TTCAACTAAC CATCTCCCAG GATCCTTGAT TACCTTGCAC CTAAAATAGA A

>Vigan.03G067100.01
ATGACCCTCA CATGCCTATT ACTGTTCTTA ATCCACATTG TGGTGGTAAA AAATTCTGAG ACTAGTAACA ATGTCCCTGC
TGTCATAGTT TTCGGAGACT CCTCTGTGGA TTCTGGGAAC AACAACGCCA TAGCCACTGT TCTCAAGAGC AACTTCAAGC
CCTATGGTCG TGACTTCGAA GGTGGTCGTC CTACGGGACG CTTCTGCAAC GGTCGTGTCC CTCCAGATTT CCTTGCTGAG
GCCTTTGGCG TCAAATCAAC CATTCCTGCA TACTTAGATC CTGCTTATAC CATTCAGGAT TTCGCCACCG GTGTTTGCTT
TGCCTCTGCT GGAACTGGTT ATGATAATGC TACTTCTGCT GTTCTGAACG TGATACCACT GTGGAAGGAA CTAGAGTTCT
ACAAGGAATA CCAAACCAGA TTGAGAAGCC ATGTTGGTGT AGAAAAAGCC AACGAGATCA TAAGCGAAGC CTTGTATTTG
ATGAGTCTAG GAACCAACGA TTTTCTTGAG AACTATTATG TGTTCCCAAC CCGAAGGATC CACTTCACCG TGTCACAGTA
TCAAGATTTT CTACTGAGTA TTGCTGAGAA TTTTGTGAGG GAATTGTATG CACTTGGAGC ACGCAAATTG TCCATAACTG
GTCTTATTCC CATAGGGTGT CTACCCTTAG AGAGGGCCAC CAACATTTTG GGGGACCATG GTTGCAACGA GGAATACAAC
AACGTTGCTT TGACCTTCAA TGCCAAGCTG GAGAATGTGA TAGCAAAGCT TAATAGAGAA CTACCACAGT TGAAAGCTTT
GTCGGCAAAT GCATACTCTA TTGTCAATGA TATCATTACA AGACCTTCTG CTTATGGATA CGAGGTTGTA GAAAAGGCGT
GTTGTTCGAC AGGAACGTTT GAGATGAGCT ACTTGTGCAG TGACAAGAGT CCACTTACAT GCACAGATGC GGAAAAGTAT
GTGTTTTGGG ATGCATTTCA TCCTACTGAA AAGACAAATC GCATAGTTTC AAACTATTTG ATTCCAAAGC TTAAAGCAAC
CTTTCGATGA 

>Vigan.03G067100.01
MTLTCLLLFL IHIVVVKNSE TSNNVPAVIV FGDSSVDSGN NNAIATVLKS NFKPYGRDFE GGRPTGRFCN GRVPPDFLAE
AFGVKSTIPA YLDPAYTIQD FATGVCFASA GTGYDNATSA VLNVIPLWKE LEFYKEYQTR LRSHVGVEKA NEIISEALYL
MSLGTNDFLE NYYVFPTRRI HFTVSQYQDF LLSIAENFVR ELYALGARKL SITGLIPIGC LPLERATNIL GDHGCNEEYN
NVALTFNAKL ENVIAKLNRE LPQLKALSAN AYSIVNDIIT RPSAYGYEVV EKACCSTGTF EMSYLCSDKS PLTCTDAEKY
VFWDAFHPTE KTNRIVSNYL IPKLKATFR*