GBrowse Details

Vigan.03G067600.01

Basic Information:
Name: Vigan.03G067600.01
Multiple alignment
Variant Information
Position: Chr03:6526054..6530895 (- strand)
Length: 4842
Functional Information:
Description: Similar to Uncharacterized protein. [I1JIG9, Glycine max]
GO: Molecular Function: hydrolase activity (GO:0016787)
InterPro: Beta-lactamase-like (IPR001279)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.67,7.70,8.14,23.71,9.26,8.59,5.73,4.89
Arabidopsis thaliana homolog: AT2G04530.1
Automatic updates:
Name: NM_001255636 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ribonuclease Z, chloroplastic-like (LOC100807082), mRNA; nuclear gene for chloroplast product.
PubMed ID: 28294342 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:6526054..6526237 (- strand)
Length: 184
Type: three_prime_UTR
Position: Chr03:6526238..6526327 (- strand)
Length: 90
Type: CDS
Position: Chr03:6526724..6526798 (- strand)
Length: 75
Type: CDS
Position: Chr03:6527244..6527312 (- strand)
Length: 69
Type: CDS
Position: Chr03:6528783..6528896 (- strand)
Length: 114
Type: CDS
Position: Chr03:6528970..6529065 (- strand)
Length: 96
Type: CDS
Position: Chr03:6529334..6529404 (- strand)
Length: 71
Type: CDS
Position: Chr03:6529478..6529640 (- strand)
Length: 163
Type: CDS
Position: Chr03:6530303..6530677 (- strand)
Length: 375
Type: CDS
Position: Chr03:6530678..6530895 (- strand)
Length: 218
Type: five_prime_UTR


>Vigan.03G067600.01
TTAGAATCCA TTTTGTCAAA TTTTGGATAA AGAAATAGCA ATAAAACCTG AAAGTCGAAA CGGCAGTGTT TAGCAAGTTA
ACCTTATCTT CGAATTCCAT CACCAATGTC CCTGTGGTTG ATTTATATAG ACACCCACCA ACGTCTGTAA AACCCAGATT
AAACCCTCTT TTTTCAGTCC CTCTTTCTAT CCATCACCGT TCAAATTCAT AAGCAACAAT GCATATTTCT CTTAGCAACT
TAGCCTTCAA GACCCCTCAA CACTTTCCAC TGCACCACCC CATTCTCCCT CCAAAGCCAC TGCACCACCA AGTTTCAACG
CAAAGCCATA TCAATGTGCT GAAAGGGTCG GGGTATTTGT CTGAAATCAG CAAAAAAATT GATCACGAAG AGCAGTACCG
TATAGCCCGG TCGCAGGTGA ACCGGAAAGT TCTGGAATTG GAAGGTTATT CCATTGAGGG TATTTCAGTT GGAGGCCAAG
AGACATGTAT CATTATCCCT GAATTCAAGA GCACTTTTGA TATTGGGAGG TGCCCTAGTA GAGCTATTAA TCAAAATTTC
CTTTTCATTA CTCATGCTCA TCTTGACCAC ATTGGAGGGC TGCCAATGTA TGTAGCTAGC CGTGGTTTGT TCAATTTAAA
ACCTCCCACT ATCTTTGTGC CTCCTTGCAT CAAAGAGGAT GTTGAGAAGC TGCTTGATAT TCACAGAACA ATGGGCCAGG
TTGAATTGAA TGCTGAAGTG GTTGCCTTGG ATGTGGGGGA GACATATGAG ATACGGAATA ACCTTGTTGT CCGACCATTC
AGAACACAAC ATGTTATACC TAGCCAGGGC TATGTATTCT ACTCAATCAG GAAAAAATTG AGGAAACAGT ATGCACACTT
GAATGGGAAA CAAATTGAGA AATTGAAGAA GGCTGGTGCC GAGATTACAG ACACTATATT ATCTCCTGAG GTGGCCTTCA
CCGGTGATAC AACACCAGAT TTTATGCTTG AACCATGTAA CTCTGATGCA TTGAGAGCCA AAATTCTCAT AACTGAGGCA
ACTTTCCTAG ATGATTCATT CAGCATAGAT CATGCTCGGC AACATGGTCA TACTCATTTA TTTGAGATCA TTGCAAATGC
ACAGTGGATT CGCAACAAAG CAGTTCTGTT GACTCATTTT TCACCAAGAT ATTCGTTAGA GGATATTCGA CAAGCTGCAT
CAAAATTGCA GTCCAGGCTG TCCGCAAAGG TGGTTCCTCT TACGGAAGGC TTCAAATCTA TGTACACTTA GGAATCAACG
TATATTCACT CTTCACCATT ATCAGTGTAT CAAATAGAGG ACAAAAGTGT TCCTAGGTGT AGATTTCACA GTTTATTTCT
TGTAAATTAG AGAGGTACAT TTTATTTTTG AACTTGTAAG CTTTCAATTT ATACCTATGT AATTTACACA GCGTTAAAGT
TATTGTTTCC CCAAC

>Vigan.03G067600.01
ATGCATATTT CTCTTAGCAA CTTAGCCTTC AAGACCCCTC AACACTTTCC ACTGCACCAC CCCATTCTCC CTCCAAAGCC
ACTGCACCAC CAAGTTTCAA CGCAAAGCCA TATCAATGTG CTGAAAGGGT CGGGGTATTT GTCTGAAATC AGCAAAAAAA
TTGATCACGA AGAGCAGTAC CGTATAGCCC GGTCGCAGGT GAACCGGAAA GTTCTGGAAT TGGAAGGTTA TTCCATTGAG
GGTATTTCAG TTGGAGGCCA AGAGACATGT ATCATTATCC CTGAATTCAA GAGCACTTTT GATATTGGGA GGTGCCCTAG
TAGAGCTATT AATCAAAATT TCCTTTTCAT TACTCATGCT CATCTTGACC ACATTGGAGG GCTGCCAATG TATGTAGCTA
GCCGTGGTTT GTTCAATTTA AAACCTCCCA CTATCTTTGT GCCTCCTTGC ATCAAAGAGG ATGTTGAGAA GCTGCTTGAT
ATTCACAGAA CAATGGGCCA GGTTGAATTG AATGCTGAAG TGGTTGCCTT GGATGTGGGG GAGACATATG AGATACGGAA
TAACCTTGTT GTCCGACCAT TCAGAACACA ACATGTTATA CCTAGCCAGG GCTATGTATT CTACTCAATC AGGAAAAAAT
TGAGGAAACA GTATGCACAC TTGAATGGGA AACAAATTGA GAAATTGAAG AAGGCTGGTG CCGAGATTAC AGACACTATA
TTATCTCCTG AGGTGGCCTT CACCGGTGAT ACAACACCAG ATTTTATGCT TGAACCATGT AACTCTGATG CATTGAGAGC
CAAAATTCTC ATAACTGAGG CAACTTTCCT AGATGATTCA TTCAGCATAG ATCATGCTCG GCAACATGGT CATACTCATT
TATTTGAGAT CATTGCAAAT GCACAGTGGA TTCGCAACAA AGCAGTTCTG TTGACTCATT TTTCACCAAG ATATTCGTTA
GAGGATATTC GACAAGCTGC ATCAAAATTG CAGTCCAGGC TGTCCGCAAA GGTGGTTCCT CTTACGGAAG GCTTCAAATC
TATGTACACT TAG

>Vigan.03G067600.01
MHISLSNLAF KTPQHFPLHH PILPPKPLHH QVSTQSHINV LKGSGYLSEI SKKIDHEEQY RIARSQVNRK VLELEGYSIE
GISVGGQETC IIIPEFKSTF DIGRCPSRAI NQNFLFITHA HLDHIGGLPM YVASRGLFNL KPPTIFVPPC IKEDVEKLLD
IHRTMGQVEL NAEVVALDVG ETYEIRNNLV VRPFRTQHVI PSQGYVFYSI RKKLRKQYAH LNGKQIEKLK KAGAEITDTI
LSPEVAFTGD TTPDFMLEPC NSDALRAKIL ITEATFLDDS FSIDHARQHG HTHLFEIIAN AQWIRNKAVL LTHFSPRYSL
EDIRQAASKL QSRLSAKVVP LTEGFKSMYT *