GBrowse Details

Vigan.03G072000.01

Basic Information:
Name: Vigan.03G072000.01
Multiple alignment
Variant Information
Position: Chr03:6931822..6934671 (+ strand)
Length: 2850
Functional Information:
Description: Similar to uncharacterized protein. [C6T7L2, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Molecular Function: protein binding (GO:0005515)
InterPro: NSF attachment protein (IPR000744)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat (IPR019734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,0.04,5.90,2.56,8.34,4.05,9.35,5.79
Arabidopsis thaliana homolog: AT3G56190.1
Automatic updates:
Name: NM_001255626 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max soluble NSF attachment protein SNAP14 (GMSNAP14), mRNA.
PubMed ID: 28338077 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:6931822..6932065 (+ strand)
Length: 244
Type: five_prime_UTR
Position: Chr03:6932066..6932210 (+ strand)
Length: 145
Type: CDS
Position: Chr03:6932304..6932353 (+ strand)
Length: 50
Type: CDS
Position: Chr03:6932452..6932524 (+ strand)
Length: 73
Type: CDS
Position: Chr03:6932722..6932801 (+ strand)
Length: 80
Type: CDS
Position: Chr03:6932924..6933075 (+ strand)
Length: 152
Type: CDS
Position: Chr03:6933421..6933580 (+ strand)
Length: 160
Type: CDS
Position: Chr03:6933667..6933714 (+ strand)
Length: 48
Type: CDS
Position: Chr03:6933839..6933919 (+ strand)
Length: 81
Type: CDS
Position: Chr03:6934330..6934410 (+ strand)
Length: 81
Type: CDS
Position: Chr03:6934411..6934671 (+ strand)
Length: 261
Type: three_prime_UTR


>Vigan.03G072000.01
ATACTACATC GATGAAAGTG CATTTTTAGT AAAAAAAATT GTTTGTAATG GATGAAATGG CGGAACGAGC GGACCCGGGA
AAGCATCTTC CTAATTGGAA AAACTAACCA TTGTTGTAAT TGCGTGTAAA ACTTCCATTA GCGTTAGAGT TTAATTTGAT
GATAAAGAGT TTCTATCAAG GAACAATTAA CGAAGACTGC ATGAAGGAGA GGGAATCGAT CGATTGATTC CAATAATTAA
AAACATGGGC GATCATTTGG CTAGGGCCCA GGATTTCGAG AGCAAGGCAG AGAAGAGGCT CACCGGTTGG GGTTTGTTTG
GCTCCAAATT CGAGGACGCC GCTGATCTCT TCGACAAATC CTCCAATTCC TACAAGTTGG CCAAATCATG GGATAAAGCA
GGAGCCACGT ACATCAAATT GGCGAATTGT CATTTGAAGT TGGAAAGCAA GCATGAAGCT GCCCAAGCTT ATGTTGACGC
TGCGCATTGC TATAAAAAAA CTAACATAAA TGAGGCTGTA TCTTGCTTAG ACAATGCTGT AAATATTTTT TGTGAGATTG
GAAGACTCTC TATGGCTGCT AGATATTTGA AGGAAATTGC TGAGTTATAT GAGGCTGAAC AAAATATCGA GCAGGCAGTA
ATTTACTTTG AAAGAGCCGC TGATTTTTAT GAAAATGAAG AAGTGAACAC TTCTGCAAAC CAGTGCAAGC AAAAAGTTGC
TCAATACTCT GCACAGCTAG AACAATATCA GAGGTCAATT GAGATTTACG AAGAGATTGC TCGCCAGTCT CTAAACAATA
ATTTGCTGAA GTATGGAGTT AAAGGACATC TTCTTAATGC TGGCATTTGC CAACTTTGTA GAGGCGATGT TGTTGCTATT
ACCAATGCAC TGGAGCGATA TCAGGATATA GATCCAACAT TTTCAGGAAC ACGTGAATAT AGATTTCTTG CAGATATTGT
TGCTGCAATT GATGAAGAAG ATGTTGGAAA GTTTACTGAA GTTGTAAAAG AATTTGATAG CATGACCCCT CTGGACTCTT
GGAAGACAAC ACTTCTTTTG AGGGTGAAGG ATAAACTGAA AGCCAAAGAA CTTGAGGAGG ATGATCTTAC TTGAATTGGA
TAATAGTCTT CTTTCGGTTG GATATCTTGT TTGATATTTT TATGGTTCTT TGTCTAGTTG CTCATCTCAC TACTAATATA
AATTGTACTT TGCTTTGAGT TTCAATTGGA ATGGTCTTCA TGAATTCTTG AAATGAATAT GTTGAGGTAG CTAGAGTTAA
TCTGTTGATC GACTTTTATT GGATTTGCAT ATATATACTG GACAGTTTTC ATCATAAAGA GATTTTATAG TAGCAATTTA
TTTGGAGGAA TGAAA

>Vigan.03G072000.01
ATGGGCGATC ATTTGGCTAG GGCCCAGGAT TTCGAGAGCA AGGCAGAGAA GAGGCTCACC GGTTGGGGTT TGTTTGGCTC
CAAATTCGAG GACGCCGCTG ATCTCTTCGA CAAATCCTCC AATTCCTACA AGTTGGCCAA ATCATGGGAT AAAGCAGGAG
CCACGTACAT CAAATTGGCG AATTGTCATT TGAAGTTGGA AAGCAAGCAT GAAGCTGCCC AAGCTTATGT TGACGCTGCG
CATTGCTATA AAAAAACTAA CATAAATGAG GCTGTATCTT GCTTAGACAA TGCTGTAAAT ATTTTTTGTG AGATTGGAAG
ACTCTCTATG GCTGCTAGAT ATTTGAAGGA AATTGCTGAG TTATATGAGG CTGAACAAAA TATCGAGCAG GCAGTAATTT
ACTTTGAAAG AGCCGCTGAT TTTTATGAAA ATGAAGAAGT GAACACTTCT GCAAACCAGT GCAAGCAAAA AGTTGCTCAA
TACTCTGCAC AGCTAGAACA ATATCAGAGG TCAATTGAGA TTTACGAAGA GATTGCTCGC CAGTCTCTAA ACAATAATTT
GCTGAAGTAT GGAGTTAAAG GACATCTTCT TAATGCTGGC ATTTGCCAAC TTTGTAGAGG CGATGTTGTT GCTATTACCA
ATGCACTGGA GCGATATCAG GATATAGATC CAACATTTTC AGGAACACGT GAATATAGAT TTCTTGCAGA TATTGTTGCT
GCAATTGATG AAGAAGATGT TGGAAAGTTT ACTGAAGTTG TAAAAGAATT TGATAGCATG ACCCCTCTGG ACTCTTGGAA
GACAACACTT CTTTTGAGGG TGAAGGATAA ACTGAAAGCC AAAGAACTTG AGGAGGATGA TCTTACTTGA 

>Vigan.03G072000.01
MGDHLARAQD FESKAEKRLT GWGLFGSKFE DAADLFDKSS NSYKLAKSWD KAGATYIKLA NCHLKLESKH EAAQAYVDAA
HCYKKTNINE AVSCLDNAVN IFCEIGRLSM AARYLKEIAE LYEAEQNIEQ AVIYFERAAD FYENEEVNTS ANQCKQKVAQ
YSAQLEQYQR SIEIYEEIAR QSLNNNLLKY GVKGHLLNAG ICQLCRGDVV AITNALERYQ DIDPTFSGTR EYRFLADIVA
AIDEEDVGKF TEVVKEFDSM TPLDSWKTTL LLRVKDKLKA KELEEDDLT*