GBrowse Details

Vigan.03G077300.01

Basic Information:
Name: Vigan.03G077300.01
Multiple alignment
Variant Information
Position: Chr03:7548209..7553264 (+ strand)
Length: 5056
Functional Information:
Description: Similar to carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 2-like. [XP_003545230.1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
Molecular Function: phosphatase activity (GO:0016791)
InterPro: NLI interacting factor (IPR004274)
Dullard phosphatase domain, eukaryotic (IPR011948)
HAD-like domain (IPR023214)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.03,16.43,18.19,25.88,10.16,16.88,27.24,11.14
Arabidopsis thaliana homolog: AT3G55960.1
Automatic updates:
Name: NM_001255315 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max CTD small phosphatase-like protein 2-like (LOC100783451), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:7548209..7548623 (+ strand)
Length: 415
Type: five_prime_UTR
Position: Chr03:7548624..7548917 (+ strand)
Length: 294
Type: CDS
Position: Chr03:7550164..7550292 (+ strand)
Length: 129
Type: CDS
Position: Chr03:7550376..7550496 (+ strand)
Length: 121
Type: CDS
Position: Chr03:7550582..7550663 (+ strand)
Length: 82
Type: CDS
Position: Chr03:7551626..7551779 (+ strand)
Length: 154
Type: CDS
Position: Chr03:7551894..7552028 (+ strand)
Length: 135
Type: CDS
Position: Chr03:7552029..7553264 (+ strand)
Length: 1236
Type: three_prime_UTR


>Vigan.03G077300.01
AAACGATTTG GATTTTGAGA CAGTCGTATT AACTTGTGAG CCAATCAATT TTCAATGAAC AGAGAAAAAG CAAAATATCC
AAAAATCCGA ATTTATTAAA TAACAGGGAA ACCTAGAAGC CATTCGTGAC TAACGCGCCA CCAAGGCCTT CACGCGCAAC
CGCAGCGCGT GACGTGTTCT GCGTTGGCTT TTCCCCTCCC TTTCTCTTTT GTATCGTTCC CCTTCTCTCT CTCTGCAGAC
CTCGTCGAAG CACCACCGTG ACCACATCTC TCTGAAAGTC AGACGAACAA GAGAGAGAAG AAGCGATTTA ATAAAAGGCC
GTACGAAGCA CGTCACGAAC GCAATTTAAA GCAGAAGAAG CGATTTATAA ATTGTTTGGG TTGGGGTGGT TGGGTTAGGG
TATTATCTAT CTGCTATGGG CGAGTTGACT CAGGCGGAGG TGTACTCGCC GAGGACTCAG CAAGTGTGGA GGGCGCTGTT
GAGTTGGTTG GCCTTCTTCT TTCAGATCTT CTTTCAGATT ATAAGAGCCT TAGGTCACTA TCCTCTGCTT TCTTTCTCTT
CTTCTTCCTC TTCCTCCTCT TCCTCTTCTT CTTCCTTTAA GCCTCTTCCC TCTGTTGAGC TTGTCGAACA CGATTCGCCT
CCTCCATCCG CTCTTGAAAT CACAGCCCTT GATTATTCTC CCGCCGATCA TCCCATCCAA AAACTCACGG TGGTGCTGGA
CTTAGATGAA ACACTGGTAT GTGCATATGA GACATCAAGT TTGCCAGCTG CTTTACGGAC TCAAGCAATC GAAGGTGGTT
TGAATTGGTT TGAGCTGGAA TGTGTATCGA TAGACAAGGA AGGAGAGGGC AAACCAAAAA TCAATTATGT TACAGTATTT
GAACGCCCTG GGTTGAAGGA ATTCTTAAAG AAACTTAGTG AATTTGCTGA CTTGGTGCTG TTCACTGCTG GTCTTGAAGG
CTATGCTAGA CCCCTCGTTG ACAGAATAGA TGAGGAAAAT CGATTCAGTC TACGGCTTTA TCGGCCCTCA ACAATTAGCA
CGGAATATCG GGAACATGTC AAGGATCTCA CCTGCATTTC AAAGGATCTT TGCCGCATTG TAATTGTGGA CAATAATCCT
TTCAGCTTTG TATTGCAACC AGTAAATGGA ATTCCATGCA TTCCTTTTTC GGCTGGACAA CCACATGACA CCCAGCTTCT
AGATGTCATT CTCCCCCTTC TCAAGCAACT TTCTGAGCTG AATGATGTAA GACCTTTGCT CTATGAAAAG TTCCACATGC
CTGATTGGTT CCAGAAACAA GGGATTCCGG CTTCTAGTTG GACTTTGTAG GATTAAACTA GTTTGTCATT AAGCTCTCCT
TTTTTTCCTT TTGCTGAAAT TCTTAGTTAT TTTGCTGGAA GGGCAGCTGC TGATTGGTTG AAGTAGATTC TTTGTATAGC
ATGAATTTGT TTTTGGATCA CTCAAATGTT TCAAATGCTG CTTCTTGAAG TCAAATCAGT TCACCACTTG TGTATGTAGA
TTGTCAGAAT TCTGATTCTT GTTTATAGGC TTGAAGTCTG TTGGAAAGTG TCTTGTTAGT CCATTGTATA ATTATTATCA
ATGATTATCA TCGGTTTAAA CATTGGTTAC GTTGCATAGT TTGTTATGAC CAGTGTTGGT GAAGGATGTT AAATAAATCA
AAGCTAACTA TTTAAAATGA CGTTGCTTAT TTTCCTTATT TGGGGTCAAT TGCTTTAACG AGTGAAAGAA AGGCTTCAGG
GAGGTGGAGG TTTCAAGACA GTTGTTCTAT TACCGCTAAA CTTTTAAGAC TGATTATGTG GTCCTGGTCG TTAGCATAAT
TTATGTCATT TGAGATATTC AACTGATGCA GCTTACATTA TTAGTCGCTC ACAGTCAGAA TGCTGTGGCA CATTGGCAAG
TGTTGGAGAA ACTTTTTGAT GTTAGGTAGC TATGATTGGC CTCTGAATAA AGAGAACCAT TTTAATTCCG CCTCCATATT
GCGTGCTAAC TTGGAGTTGT TGGCTGTTTT TTCTTTTGAC TGGTATAATA AATTAAAGTA TTTTACCTTG CTTCTTGGTA
GTTGGGAGTA AATAGTATGA AGTTGCGTAT AAGGATAACT ATGGATGTTG TCTACAGTGA GCTCACTATT TAGACAATTA
GAACTTCAGA TGGATTTATC CAGGTGACTA TGTTGGAAAC TTATAATACT TGACAGTTAC TGAAATTGAT ATATTGGATC
ATTTAACCGA GTGAAATGGA TGTAGGAAAG GTATACAAAT TCATTTTTAG CTCACTTAAT ATTGATTAAA ATTTATTAGA
AACTTATAAA ATGATAGGTG AAGTTTATTG ATAGAGATCT TCACATATCT CTTATGTTGT TATCAAATGA TGGAAGACAT
GAAGTGGCCG AGCGGTGAGA AAGAAGAAGA TGGGAAACGA ACGGCTGAAG ACTACTGAAC GTCTGAAGGC AGTAAAGCTA
CCGAACGGTT GAAGGCTACC GAACGGTAGA AGCACGAAAG CCAATTGGTT GCAGAGTTTT AGAATCTTAT TATATAGTTT
ATTAAT

>Vigan.03G077300.01
ATGGGCGAGT TGACTCAGGC GGAGGTGTAC TCGCCGAGGA CTCAGCAAGT GTGGAGGGCG CTGTTGAGTT GGTTGGCCTT
CTTCTTTCAG ATCTTCTTTC AGATTATAAG AGCCTTAGGT CACTATCCTC TGCTTTCTTT CTCTTCTTCT TCCTCTTCCT
CCTCTTCCTC TTCTTCTTCC TTTAAGCCTC TTCCCTCTGT TGAGCTTGTC GAACACGATT CGCCTCCTCC ATCCGCTCTT
GAAATCACAG CCCTTGATTA TTCTCCCGCC GATCATCCCA TCCAAAAACT CACGGTGGTG CTGGACTTAG ATGAAACACT
GGTATGTGCA TATGAGACAT CAAGTTTGCC AGCTGCTTTA CGGACTCAAG CAATCGAAGG TGGTTTGAAT TGGTTTGAGC
TGGAATGTGT ATCGATAGAC AAGGAAGGAG AGGGCAAACC AAAAATCAAT TATGTTACAG TATTTGAACG CCCTGGGTTG
AAGGAATTCT TAAAGAAACT TAGTGAATTT GCTGACTTGG TGCTGTTCAC TGCTGGTCTT GAAGGCTATG CTAGACCCCT
CGTTGACAGA ATAGATGAGG AAAATCGATT CAGTCTACGG CTTTATCGGC CCTCAACAAT TAGCACGGAA TATCGGGAAC
ATGTCAAGGA TCTCACCTGC ATTTCAAAGG ATCTTTGCCG CATTGTAATT GTGGACAATA ATCCTTTCAG CTTTGTATTG
CAACCAGTAA ATGGAATTCC ATGCATTCCT TTTTCGGCTG GACAACCACA TGACACCCAG CTTCTAGATG TCATTCTCCC
CCTTCTCAAG CAACTTTCTG AGCTGAATGA TGTAAGACCT TTGCTCTATG AAAAGTTCCA CATGCCTGAT TGGTTCCAGA
AACAAGGGAT TCCGGCTTCT AGTTGGACTT TGTAG

>Vigan.03G077300.01
MGELTQAEVY SPRTQQVWRA LLSWLAFFFQ IFFQIIRALG HYPLLSFSSS SSSSSSSSSS FKPLPSVELV EHDSPPPSAL
EITALDYSPA DHPIQKLTVV LDLDETLVCA YETSSLPAAL RTQAIEGGLN WFELECVSID KEGEGKPKIN YVTVFERPGL
KEFLKKLSEF ADLVLFTAGL EGYARPLVDR IDEENRFSLR LYRPSTISTE YREHVKDLTC ISKDLCRIVI VDNNPFSFVL
QPVNGIPCIP FSAGQPHDTQ LLDVILPLLK QLSELNDVRP LLYEKFHMPD WFQKQGIPAS SWTL*