GBrowse Details

Vigan.03G082700.01

Basic Information:
Name: Vigan.03G082700.01
Multiple alignment
Variant Information
Position: Chr03:8095450..8098349 (+ strand)
Length: 2900
Functional Information:
Description: Similar to Emb:CAB81597.1. [XP_007009129.1, Theobroma cacao]
InterPro: Protein of unknown function DUF620 (IPR006873)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.03,0.22,4.28,0.86,1.13,1.91,3.14,5.20
Arabidopsis thaliana homolog: AT5G05840.1
Automatic updates:
Name: NM_001254704 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100815870 (LOC100815870), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:8095450..8095730 (+ strand)
Length: 281
Type: five_prime_UTR
Position: Chr03:8095731..8096012 (+ strand)
Length: 282
Type: CDS
Position: Chr03:8096298..8096663 (+ strand)
Length: 366
Type: CDS
Position: Chr03:8097567..8098208 (+ strand)
Length: 642
Type: CDS
Position: Chr03:8098209..8098349 (+ strand)
Length: 141
Type: three_prime_UTR


>Vigan.03G082700.01
TGCGAACACG ACGAGATAGA CGAGTGAGGG TCCCCATAGT TTGGTTGTTA ATCTTTTTCC AAAGTAACAT ACTCAATACT
CAACAACACT CGTATAACTA TTTCCTTCTC CCTTTCCGTT CAAGACTCCA ACCCTCTCTT TTCTCTTCTC TTTCGTCACT
TTCTCATCTC ATAAGCCATC TCAACCCATA AACATTTTCT TCATTTCATG CTCATCAAAA TCAAACCACA TTTTCTTCAC
TCATCTCTTT GATTTCTGCT TCCTATATCT CTCTCTCTGC TATGAAGAAA CTCTGTCCCA ATCTTGCTCG CGAGGATGGA
CTCCAAACCG TGCTCGAGGT TCCCATCCCA GAAGAGATTT TCACCATCAA AAGCGGAACC AGCAGAGCTT GGCATAACAT
GAAGTCATGG ATGAAGCCAA ACGTTGAATC TTCTACATCA TCATCACTCT TTGGGGACCA AAATACTGAT ATCCAGCTCT
TGCTTGGTGT TGTTGGAGCA CCATTGATCC CTCTCCCTGT CACTTCTCAC GACCAACCCA TCACCATTAA ATCCCATAAC
ATTGAGGCTT CGATGGCGAA ATACATAGTG AAACAGTACG TGGCGGCTGT GGGAGGAGAG AGTGCTTTGA ATTGGGTGGA
AAGCATGTAC GCTGTGGGGG AGGTGAGGGT AGGGACAACA GAGTTTTCAG GAAGTGAAGA ATGTGTGAGT AAGAAGAAGA
TGGTGAAAGT GAAGAAGATG CAGAAGAAAG GGGAAGTGGG AGGGTTTGTT GTGTGGCAGA AGAAGCCAGA ACTGTGGTGT
TTGGAGCTGG TTGTTTCTGG GTACAAAATC AGTGCCGGGA GTGATGGGAA AGTGGCATGG AGGCAAACAC CATGGCACCA
TTCTCATGCT TCTCGTGGCC CACCAAGACC ACTCAGGCGT TTACTTCAGG GTCTTGATCC AAGGTCCACA GCCAATTTGT
TCAACAACTC CATATGCATT GGAGAGAAGA CAGTGAATAA CGAAGAATGT TTCATATTGA AACTTGAAGC AGATTCCAAT
ACACTTCAAA CAAGAAGTAG CAGCAACGTA GAGATTATAC GTCACACTGT GTGGGGCTAC TTCAGCCAAA GAACAGGTCT
TTTGGTCCAA TTAGAGGACT CTCACTTGCT GAAACTCAAA ACCACAGCAA ATGATGCTAT ATTCTGGGAA ACCAACATGG
AGTCTCTAAT ACAAGACTAC AAAACTGTGG ATGGAATTAA CATAGCACAT GCAGGAAAAA CTTGGGTGAC ACTGTCTAGG
TTTGGTGAAG GCCCAGAGAG CCATTCCAAA ACCAGAGTAA AAGAGGTTTG GAAGATTGAA GAAGTGGATT TTAACATCAA
AGGGTTGTCC ATTGATTGCT TCCTACCACC CAGTGATTTG AAGAAAGAGG AAGAAAAAGT GGTGGAAGAT TGTAGGATGG
CTGCAAGCAA TACAAAGTTA CCTTACAAGA TTCAATCTGC TTCTTTTAAG ATTAGTGTTT CCAAAGTAGC TGCTGTTAAT
GTGGATGATT CAAGTGGTAG TGAAAGTGAT GGTGATGAAG AAGACATGTA ATCAGTACCT TCCATTTTGT AAGACCACAC
CATTTGATTT GTGGGGCTTG GTCATGCTTG TAGGAAATAT ATATAGTGTA TGTCAAATAA CATGAGTATG AGACTAAAAT
CATTTCTAAA AAACTAAAAC ATTGTTCAGT CT

>Vigan.03G082700.01
ATGAAGAAAC TCTGTCCCAA TCTTGCTCGC GAGGATGGAC TCCAAACCGT GCTCGAGGTT CCCATCCCAG AAGAGATTTT
CACCATCAAA AGCGGAACCA GCAGAGCTTG GCATAACATG AAGTCATGGA TGAAGCCAAA CGTTGAATCT TCTACATCAT
CATCACTCTT TGGGGACCAA AATACTGATA TCCAGCTCTT GCTTGGTGTT GTTGGAGCAC CATTGATCCC TCTCCCTGTC
ACTTCTCACG ACCAACCCAT CACCATTAAA TCCCATAACA TTGAGGCTTC GATGGCGAAA TACATAGTGA AACAGTACGT
GGCGGCTGTG GGAGGAGAGA GTGCTTTGAA TTGGGTGGAA AGCATGTACG CTGTGGGGGA GGTGAGGGTA GGGACAACAG
AGTTTTCAGG AAGTGAAGAA TGTGTGAGTA AGAAGAAGAT GGTGAAAGTG AAGAAGATGC AGAAGAAAGG GGAAGTGGGA
GGGTTTGTTG TGTGGCAGAA GAAGCCAGAA CTGTGGTGTT TGGAGCTGGT TGTTTCTGGG TACAAAATCA GTGCCGGGAG
TGATGGGAAA GTGGCATGGA GGCAAACACC ATGGCACCAT TCTCATGCTT CTCGTGGCCC ACCAAGACCA CTCAGGCGTT
TACTTCAGGG TCTTGATCCA AGGTCCACAG CCAATTTGTT CAACAACTCC ATATGCATTG GAGAGAAGAC AGTGAATAAC
GAAGAATGTT TCATATTGAA ACTTGAAGCA GATTCCAATA CACTTCAAAC AAGAAGTAGC AGCAACGTAG AGATTATACG
TCACACTGTG TGGGGCTACT TCAGCCAAAG AACAGGTCTT TTGGTCCAAT TAGAGGACTC TCACTTGCTG AAACTCAAAA
CCACAGCAAA TGATGCTATA TTCTGGGAAA CCAACATGGA GTCTCTAATA CAAGACTACA AAACTGTGGA TGGAATTAAC
ATAGCACATG CAGGAAAAAC TTGGGTGACA CTGTCTAGGT TTGGTGAAGG CCCAGAGAGC CATTCCAAAA CCAGAGTAAA
AGAGGTTTGG AAGATTGAAG AAGTGGATTT TAACATCAAA GGGTTGTCCA TTGATTGCTT CCTACCACCC AGTGATTTGA
AGAAAGAGGA AGAAAAAGTG GTGGAAGATT GTAGGATGGC TGCAAGCAAT ACAAAGTTAC CTTACAAGAT TCAATCTGCT
TCTTTTAAGA TTAGTGTTTC CAAAGTAGCT GCTGTTAATG TGGATGATTC AAGTGGTAGT GAAAGTGATG GTGATGAAGA
AGACATGTAA 

>Vigan.03G082700.01
MKKLCPNLAR EDGLQTVLEV PIPEEIFTIK SGTSRAWHNM KSWMKPNVES STSSSLFGDQ NTDIQLLLGV VGAPLIPLPV
TSHDQPITIK SHNIEASMAK YIVKQYVAAV GGESALNWVE SMYAVGEVRV GTTEFSGSEE CVSKKKMVKV KKMQKKGEVG
GFVVWQKKPE LWCLELVVSG YKISAGSDGK VAWRQTPWHH SHASRGPPRP LRRLLQGLDP RSTANLFNNS ICIGEKTVNN
EECFILKLEA DSNTLQTRSS SNVEIIRHTV WGYFSQRTGL LVQLEDSHLL KLKTTANDAI FWETNMESLI QDYKTVDGIN
IAHAGKTWVT LSRFGEGPES HSKTRVKEVW KIEEVDFNIK GLSIDCFLPP SDLKKEEEKV VEDCRMAASN TKLPYKIQSA
SFKISVSKVA AVNVDDSSGS ESDGDEEDM*