GBrowse Details

Vigan.03G085500.01

Basic Information:
Name: Vigan.03G085500.01
Multiple alignment
Variant Information
Position: Chr03:8580004..8584203 (+ strand)
Length: 4200
Functional Information:
Description: Similar to Uncharacterized protein. [I1JI27, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Yip1 domain (IPR006977)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.99,5.36,9.47,8.61,13.32,22.78,16.65,11.19
Arabidopsis thaliana homolog: AT2G39805.2
Automatic updates:
Name: NM_001254240 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein YIPF1 homolog (LOC100813483), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:8580004..8580237 (+ strand)
Length: 234
Type: five_prime_UTR
Position: Chr03:8580238..8580294 (+ strand)
Length: 57
Type: CDS
Position: Chr03:8580772..8580811 (+ strand)
Length: 40
Type: CDS
Position: Chr03:8580915..8580998 (+ strand)
Length: 84
Type: CDS
Position: Chr03:8582129..8582294 (+ strand)
Length: 166
Type: CDS
Position: Chr03:8582576..8582849 (+ strand)
Length: 274
Type: CDS
Position: Chr03:8583372..8583563 (+ strand)
Length: 192
Type: CDS
Position: Chr03:8583564..8584203 (+ strand)
Length: 640
Type: three_prime_UTR


>Vigan.03G085500.01
GACCCGGCGA ATTGAAGTTG AGGGTGGGGT CCAATCCCGT GTATGAAAGA GCACGCTATT TTGTTTAGAG TCCTCCCTCT
GCAACACGTT CCTTCCAAAC GACGATAGAA AAAACAACTT TCGTTCTGCT ATCTAGGGCT CTATTCCGAT TCCGAGTCCG
AACCCCCTCA ATGCTTATCT GAACTAATTA GGTCGTCTTC ACTTACGCTT TTTCTCTGCA TTGTATCGAT TTCCATGGAG
GAGTCTTCCT ACACCGGTCT TCCCACTAGC CACTTGCTTG GTTCAGTTCC TGCTGTCATT ACTGAAGAAA ATAATAGCAC
GAAACATGTG GCCACTGATG AGAGTATGCA AATATTCCCT CCAAACAATG GAGTAGACCG AGGAACTGGA TATCAAACGG
TTGGCGGCCG TACTGAAGCT TTTGAACAAC AGCCAGCAAG CAACTGGAGG GGAGTCTTTA GCATCTCATC GTATTCACAG
TATTTTGATG TAGACACGGA TGTTGTCGTA ATCAGATTAA TAAGTTCTCT GAATCCAGTT GCGGGAGACT TCTTCAGCAA
GATAGATGCT AACCCTGATT TATATGGGCT TATATGGATC TCAACAACAC TGGTGTTTGT GCTTGCCGCA CTTGGAAATC
TGGCTACGTT CCTTATGCAA AAACATGCTG ATAACAGTAC GTCGTGGAGC TTTGATGTCA GCTATATGAA CGTGGCTGCA
TGCTCAATCT ACGGTTATGC AATTGTGGTC CCATTGGCAT ACTACTTCTT CCTTCAGTAT ATGGGTTCAA ATGCCAGCCT
TATAAGATTT TGGTGCATGT GGGGGTATTC TCTCACCATT TTCATCATAT CTTCGTTCCT GTTGTTAATT CCTGTTGAGT
TTCTTCGGTG GGTTATAATA CTCCTTACGG GTGTTGCCTC AGCAAGCTTT GTTGCTTTAA ACCTGAGGTC TTACATAGAA
GGCAATGAGC TTTCGGTGGC GATTATTGCT GCATTTTTCT TGCAAATAGC TTTGGCAATC TTCATCAAGG TTTGGTTCTT
TCCGTAGCTA AAATGCTCTG CAGCAGTGAA GAATAAGCCC CGAACACTGT CATTATGAAC TCACTGCATT GGCTAACTTT
GTTCAAGACG AGAGTGGAAT TGTCTGAAGC AGAATTGGTT TGCGTATTTT CGATTTACTA GAATGGAATG GTAAAGAATT
GCAGAGGAAT TAGTGCGAAT TTCAGTATCA GCCCGATCAG AGTTTCTGTA TCATTTTGGC TTAATGTGGA AGACTCAATA
CCCGGGAAGG GGATAATGAA TGATCATGAT TTGTAGTATC TGTGTATCTT TGAGCTTTTT GCATGTTTCT GTAAATATAC
AGAATCAAGT AAATCTTTTT TTAATTGATT TTTTAAGTGA CTGTTTTACG TGGAGCCTAG GCAATTTCTT GTACGGTGAA
TCAAAATTTT GTCATGCCAT CATCCTTTGG AAAGTGACAT TGTATCTCGG ATCACCCTTG CTTCTTATTT TTAGTTCAAT
AACAACTTGG TAGAGTGCAA CAAGGCGTCC TATCGCCTGA GCTTAAGCAT GATATGCATG CTGAGTTTTT AGTATCATCT
AATTATAATT AAAATATAAT TAGAGGAGTT TAGCAGCTAA TTGTAGTTTT GTTGTCAAAA AAATAGTTTT CATCAATTAA
ATCAAAA

>Vigan.03G085500.01
ATGGAGGAGT CTTCCTACAC CGGTCTTCCC ACTAGCCACT TGCTTGGTTC AGTTCCTGCT GTCATTACTG AAGAAAATAA
TAGCACGAAA CATGTGGCCA CTGATGAGAG TATGCAAATA TTCCCTCCAA ACAATGGAGT AGACCGAGGA ACTGGATATC
AAACGGTTGG CGGCCGTACT GAAGCTTTTG AACAACAGCC AGCAAGCAAC TGGAGGGGAG TCTTTAGCAT CTCATCGTAT
TCACAGTATT TTGATGTAGA CACGGATGTT GTCGTAATCA GATTAATAAG TTCTCTGAAT CCAGTTGCGG GAGACTTCTT
CAGCAAGATA GATGCTAACC CTGATTTATA TGGGCTTATA TGGATCTCAA CAACACTGGT GTTTGTGCTT GCCGCACTTG
GAAATCTGGC TACGTTCCTT ATGCAAAAAC ATGCTGATAA CAGTACGTCG TGGAGCTTTG ATGTCAGCTA TATGAACGTG
GCTGCATGCT CAATCTACGG TTATGCAATT GTGGTCCCAT TGGCATACTA CTTCTTCCTT CAGTATATGG GTTCAAATGC
CAGCCTTATA AGATTTTGGT GCATGTGGGG GTATTCTCTC ACCATTTTCA TCATATCTTC GTTCCTGTTG TTAATTCCTG
TTGAGTTTCT TCGGTGGGTT ATAATACTCC TTACGGGTGT TGCCTCAGCA AGCTTTGTTG CTTTAAACCT GAGGTCTTAC
ATAGAAGGCA ATGAGCTTTC GGTGGCGATT ATTGCTGCAT TTTTCTTGCA AATAGCTTTG GCAATCTTCA TCAAGGTTTG
GTTCTTTCCG TAG

>Vigan.03G085500.01
MEESSYTGLP TSHLLGSVPA VITEENNSTK HVATDESMQI FPPNNGVDRG TGYQTVGGRT EAFEQQPASN WRGVFSISSY
SQYFDVDTDV VVIRLISSLN PVAGDFFSKI DANPDLYGLI WISTTLVFVL AALGNLATFL MQKHADNSTS WSFDVSYMNV
AACSIYGYAI VVPLAYYFFL QYMGSNASLI RFWCMWGYSL TIFIISSFLL LIPVEFLRWV IILLTGVASA SFVALNLRSY
IEGNELSVAI IAAFFLQIAL AIFIKVWFFP *