VIGGS:GBrowse

Vigan.03G092400.01

Basic Information:

Name:	Vigan.03G092400.01 Multiple alignment Variant Information
Position:	Chr03:9302883..9309454 (- strand)
Length:	6572

Functional Information:

Description:	Similar to fructokinase-4-like. [XP_004490806.1, Cicer arietinum]
GO:	Biological Process: D-ribose metabolic process (GO:0006014)
	Molecular Function: ribokinase activity (GO:0004747)
	Molecular Function: phosphotransferase activity, alcohol group as acceptor (GO:0016773)
InterPro:	Ribokinase (IPR002139)
	Carbohydrate/puine kinase, PfkB, conserved site (IPR002173)
	Carbohydrate kinase PfkB (IPR011611)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.84,4.18,14.73,25.50,4.96,10.66,5.04,9.74
Arabidopsis thaliana homolog:	AT1G66430.1

Automatic updates:

Name:	NM_001253216 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative fructokinase-5-like (LOC100797023), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:9302883..9303112 (- strand)
Length:	230
Type:	three_prime_UTR

Position:	Chr03:9303113..9303247 (- strand)
Length:	135
Type:	CDS

Position:	Chr03:9303850..9303966 (- strand)
Length:	117
Type:	CDS

Position:	Chr03:9304623..9304760 (- strand)
Length:	138
Type:	CDS

Position:	Chr03:9304853..9305050 (- strand)
Length:	198
Type:	CDS

Position:	Chr03:9305365..9305577 (- strand)
Length:	213
Type:	CDS

Position:	Chr03:9308238..9308446 (- strand)
Length:	209
Type:	CDS

Position:	Chr03:9309002..9309143 (- strand)
Length:	142
Type:	CDS

Position:	Chr03:9309144..9309454 (- strand)
Length:	311
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G092400.01
GTCAGCAATA AGCAGTTCAA AACGTGCAGA TGCTTATGAA TCTTTCTATT GTCTGATAAA CAAATAAATA ATAAAAAAAG
CAGCAGAGAA ATTGCACATA TCGTGCATTC TGTTTCCTTT GCTTACTCCG CAACACAACG TAACCCAGAT TTCGTCCATT
CCAAAGGCAA TTTTCACACA AACCCCATCA ATTATCTTGC TCACATTCCA AATTCAGAAA AAATATTCAA TTTCGGTTGA
TAAAGAGAGA AAAGAAACGA ATTTCAAGAG CCAAGTCCTT GAGGGGTGTT TAGTAGTGAT TTCCTTGTTT GATGGCTCTT
CACTGTGGCG TTTTCAGCTT CAGGAGTGTA GCTTCTCACC CTCTATGTTC TGTCAAGTTC AGTCAGCCCA CTGTCCAAGC
TTCCACCTTT GCTTCCCCTC TTACCCCTCC TACTGCCAAA TTGAATGTCA GAGGAAAGGC TGTTCCTGGT GATGGGACAC
CTGAAACAAA GGAATCACCT CTTGTGGTTT GTTTTGGGGA AATGCTCATT GATTTTGTCC CAACTGTCAG TGGCCTTTCT
TTGGCTGAAG CACCTGCGTT TAAAAAGGCT CCTGGAGGTG CCCCTGCTAA TGTTGCAGTA GGCATATCTC GATTAGGGGG
TTCATCAGCT TTCATTGGAA AGGTCGGCGA AGATGAATTT GGATATATGC TTGCGGATAT ACTAAAGGAA AATAATGTAA
ACCATGAAGG GATGCGTTTT GACCCTGGTG CACGTACTGC CTTGGCATTT GTTACACTGA GGAGTGATGG AGAGCGAGAG
TTCATGTTTT ATCGTAATCC CAGTGCTGAT ATGCTGCTCC AAGAAGATGA GCTTGATTTG GACCTAATCA GAAAGGCGAA
GATTTTCCAT TATGGTTCTA TAAGTCTTAT AACAGAACCA TGCAAATCAG CACACATTGC TGCAGCAAAG GCTGCAAAAG
ATGCTGGTGT AGTTCTGTCT TATGATCCTA ACCTGAGGCT TCCTTTATGG CCTTCTGAAG ATAGTGCAAG AGAAGGAATT
CTGAGTATAT GGGAGACTGC AGATATCATT AAGGTAAGTG AAGAAGAGAT TTCTTTTCTT ACAAAAGGTG AGGACCCATA
CGATGATGCT GTTGTACGTA AACTATTCCA CGAAAACCTC AAGCTACTCC TAGTTACTGA AGGTGCAGAA GGTTGTAGAT
ATTACACCAA GGAGTTCAGT GGCAGGGTGA AGGGATTGAA GGTGGATGCT GTTGACACCA CTGGTGCTGG TGATGCTTTT
GTGGCTGGAA TGTTATCACA ATTATCCGTG AATCTTTCAT TGATTCAGAA AGAAGAAGAG TTGAGAGATT CTCTAAAGTT
TGCTAATGTC TGTGGTGCAT TGACTGTGAC TGAGAGAGGT GCAATTCCAG CTTTACCTAC CAAGGAAGCT GTTCTTGATG
CTATGCTTAA GCCAGTCTCC TAGCTTTGCG GCCACTCAAT GTAATTATGT GGTGAGTGAG GATAATTCTT TTTGGAGAGG
GGAATTTAAA TTCTTCTGGG AAATTGTGAG CTAGAACAAT GAATAAGAAC TGGTTATTTA GTTCAGGCAA AATTCTACCC
TAATCAAGTT TTTCATTGTT AGCTAATGGA GAATTGTTCT CCATATATCC ATTTGTACTT GATCTATGAT GTAGAAGTTG
CTATGTAATT TGT

[show][hide][copy]CDS

>Vigan.03G092400.01
ATGGCTCTTC ACTGTGGCGT TTTCAGCTTC AGGAGTGTAG CTTCTCACCC TCTATGTTCT GTCAAGTTCA GTCAGCCCAC
TGTCCAAGCT TCCACCTTTG CTTCCCCTCT TACCCCTCCT ACTGCCAAAT TGAATGTCAG AGGAAAGGCT GTTCCTGGTG
ATGGGACACC TGAAACAAAG GAATCACCTC TTGTGGTTTG TTTTGGGGAA ATGCTCATTG ATTTTGTCCC AACTGTCAGT
GGCCTTTCTT TGGCTGAAGC ACCTGCGTTT AAAAAGGCTC CTGGAGGTGC CCCTGCTAAT GTTGCAGTAG GCATATCTCG
ATTAGGGGGT TCATCAGCTT TCATTGGAAA GGTCGGCGAA GATGAATTTG GATATATGCT TGCGGATATA CTAAAGGAAA
ATAATGTAAA CCATGAAGGG ATGCGTTTTG ACCCTGGTGC ACGTACTGCC TTGGCATTTG TTACACTGAG GAGTGATGGA
GAGCGAGAGT TCATGTTTTA TCGTAATCCC AGTGCTGATA TGCTGCTCCA AGAAGATGAG CTTGATTTGG ACCTAATCAG
AAAGGCGAAG ATTTTCCATT ATGGTTCTAT AAGTCTTATA ACAGAACCAT GCAAATCAGC ACACATTGCT GCAGCAAAGG
CTGCAAAAGA TGCTGGTGTA GTTCTGTCTT ATGATCCTAA CCTGAGGCTT CCTTTATGGC CTTCTGAAGA TAGTGCAAGA
GAAGGAATTC TGAGTATATG GGAGACTGCA GATATCATTA AGGTAAGTGA AGAAGAGATT TCTTTTCTTA CAAAAGGTGA
GGACCCATAC GATGATGCTG TTGTACGTAA ACTATTCCAC GAAAACCTCA AGCTACTCCT AGTTACTGAA GGTGCAGAAG
GTTGTAGATA TTACACCAAG GAGTTCAGTG GCAGGGTGAA GGGATTGAAG GTGGATGCTG TTGACACCAC TGGTGCTGGT
GATGCTTTTG TGGCTGGAAT GTTATCACAA TTATCCGTGA ATCTTTCATT GATTCAGAAA GAAGAAGAGT TGAGAGATTC
TCTAAAGTTT GCTAATGTCT GTGGTGCATT GACTGTGACT GAGAGAGGTG CAATTCCAGC TTTACCTACC AAGGAAGCTG
TTCTTGATGC TATGCTTAAG CCAGTCTCCT AG

[show][hide][copy]PROTEIN

>Vigan.03G092400.01
MALHCGVFSF RSVASHPLCS VKFSQPTVQA STFASPLTPP TAKLNVRGKA VPGDGTPETK ESPLVVCFGE MLIDFVPTVS
GLSLAEAPAF KKAPGGAPAN VAVGISRLGG SSAFIGKVGE DEFGYMLADI LKENNVNHEG MRFDPGARTA LAFVTLRSDG
EREFMFYRNP SADMLLQEDE LDLDLIRKAK IFHYGSISLI TEPCKSAHIA AAKAAKDAGV VLSYDPNLRL PLWPSEDSAR
EGILSIWETA DIIKVSEEEI SFLTKGEDPY DDAVVRKLFH ENLKLLLVTE GAEGCRYYTK EFSGRVKGLK VDAVDTTGAG
DAFVAGMLSQ LSVNLSLIQK EEELRDSLKF ANVCGALTVT ERGAIPALPT KEAVLDAMLK PVS*