VIGGS:GBrowse

Vigan.03G094300.01

Basic Information:

Name:	Vigan.03G094300.01 Multiple alignment Variant Information
Position:	Chr03:9552836..9554968 (+ strand)
Length:	2133

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JHW4, Glycine max]
GO:	Biological Process: nucleosome assembly (GO:0006334)
	Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
	Cellular Component: chromatin (GO:0000785)
	Cellular Component: nucleosome (GO:0000786)
	Cellular Component: nucleus (GO:0005634)
	Molecular Function: DNA binding (GO:0003677)
InterPro:	High mobility group, HMG-I/HMG-Y (IPR000116)
	Linker histone H1/H5, domain H15 (IPR005818)
	Winged helix-turn-helix DNA-binding domain (IPR011991)
	AT hook, DNA-binding motif (IPR017956)
	AT hook-like (IPR020478)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:19.32,21.45,48.68,15.18,44.26,50.26,39.56,13.11

Automatic updates:

Name:	NM_001251573 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max HMG-Y related protein variant A (LOC548080), mRNA.
PubMed ID:	1891368 NCBI(pubmed)
Status:	Known Variant

Name:	NM_001360349 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max HMG-Y-related protein B (LOC100802642), mRNA.
PubMed ID:	1891368 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:9552836..9553240 (+ strand)
Length:	405
Type:	five_prime_UTR

Position:	Chr03:9553241..9553291 (+ strand)
Length:	51
Type:	CDS

Position:	Chr03:9553642..9554121 (+ strand)
Length:	480
Type:	CDS

Position:	Chr03:9554122..9554968 (+ strand)
Length:	847
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G094300.01
GAACGAACCA AAAGACAAGA GGTACCTTCA AATATTTCTG CGAACAAGCA CATTCTGCCA CGTCATCGAT CCGAGTGACC
TTCCGCAAAT ATATCTTAAG CCGTCGGATA GCCATCCTTT GTTTATTCCT AGCCGTCCAT TTTCACGAAA AGATGAACAA
AGGATAGTTG TAACAGAGGG ATGAAATTTT TTTCTTTATC TTTTTAATTA AATTTCTTTC CAATTTTTAA TTTATTTATG
CTCCTTTAAA TTCAATCCTC AGATCCTTGC TAGAGTCATC CGTATCATAC TCTTCACTTT CCTTAAATTT TTTTAACCTT
CCTCTATTAA AGTTTCCAGA TTTTTGGTGG GGTTCGTTGA GGGTACTGTG CAAGCTTTTC AGCGTCTTCA CAGCCTGCAA
CTTCGATGGC CACTGAAGAG GTTAATAAAC CTCAGTCACT TCCTCCATAC CCCGAGCTGA TACTGAAAGC GATTGAAGCT
CTGAGTGAAC CAAGTGGATC CAGCAAATCA GCAATATCAA AGTACATAGA AGCGATCTAT GGTGAGTTGA CAGACTCAAC
CGTTTTGGGT AATGAACTGA ACAAGATGAA AGAGAGTGGA GAGCTTGTGT TCAATAAGAA CAACTACATG AAAGCTGACC
CAAGTGCCCC ACCAAAGAGG GGCCGTGGAA GACCACCAAA GCCAAAGGCC CCTGTGCCAC CAGGCACCGT CGTCTCCCCT
CCGCGACCAA GGGGTCGTCC CCCAAAGGAC CCAAACGCGC CTCCGAAGTC TCCAAAGCCA AAGCCCACCC CTGGAAGTGG
CAGGCCAAGG GGGAGGCCAA AGAAGATTCC TCGGTCTCCG ACGGCGGCGT ATCCGGCCGC CGTATCCAGC GGAAGGCCCA
GGGGTAGGCC TCCAAAGGTG AAGCCTCAGT TGACAGAAGT GAGCGTTGAG TCATAGATTT GTTTCTTTAT TTGGGTGCCG
AATGTAGTGT TCCTACTCTT TATAAGTGGT CGGTGTGAGT TTAGATTCTG TGTTGATGTA ATTTCGTTGT AAAATTATGT
AGTGGTAGCT GACTTACTAA GAGGCTTTCG TGTTTGTCTT CCCTCCCGAT CATCGAAAGA GAACAGTATC TTGTGCTAAT
TCTGGCGTTC TAACTTGTGA ACCCATGATG TAGAAAAAAG GTTGCTGTTT GAGAATTAAT GTGGTTATTT ATCTGGGTAG
ATCCGTGCCA TAATACATTT AAAGGGAATC GGACAACGTA GCAGGACCCT AGAGACTGAA AAAGGAGAGT CTGGTAGTGA
TGATGTAATA AATTTGACCG TGTTTGATAT ATGGACATGA ACCTATGGAG GAACCTCGTA CGACACAATC TGTTTTCCCA
TGTTTCTGTG GATAAGACAT CTCCAGCGTG GTGTGAAGTC GTTGTTGTTT CCTTGAAGGG GGAAATAAGA CGGTCTGGTT
TGACCGGCAA GCCTAGTGCC TGTATTATCT TTCCATCATC TTAACTGTGA GGGTGACATA AATTGGTAAT GTCAGCAATG
TAATTATCTG CTTAGTCACG TTTTGGGATT AAAACTTGGG GTCATGAAAT CTTATGGACA TTGAAGCTTT GGAATCTCCT
TCATTGGTTT GTGTCTAGCA TCTTGGATGT GACGTCGTTT AACCTCGCGA TGTTGTATAA ATTACTGTCT CCTGATTATT
GAATTATGAG ACCATATGTT ATGTGTCATC CATGTATTTG ATGTCCAGTA TGTTTGTTCA ATTGTAATAA TCTTCAATCC
CAGAAAAAAA TTATTTGGGA GTT

[show][hide][copy]CDS

>Vigan.03G094300.01
ATGGCCACTG AAGAGGTTAA TAAACCTCAG TCACTTCCTC CATACCCCGA GCTGATACTG AAAGCGATTG AAGCTCTGAG
TGAACCAAGT GGATCCAGCA AATCAGCAAT ATCAAAGTAC ATAGAAGCGA TCTATGGTGA GTTGACAGAC TCAACCGTTT
TGGGTAATGA ACTGAACAAG ATGAAAGAGA GTGGAGAGCT TGTGTTCAAT AAGAACAACT ACATGAAAGC TGACCCAAGT
GCCCCACCAA AGAGGGGCCG TGGAAGACCA CCAAAGCCAA AGGCCCCTGT GCCACCAGGC ACCGTCGTCT CCCCTCCGCG
ACCAAGGGGT CGTCCCCCAA AGGACCCAAA CGCGCCTCCG AAGTCTCCAA AGCCAAAGCC CACCCCTGGA AGTGGCAGGC
CAAGGGGGAG GCCAAAGAAG ATTCCTCGGT CTCCGACGGC GGCGTATCCG GCCGCCGTAT CCAGCGGAAG GCCCAGGGGT
AGGCCTCCAA AGGTGAAGCC TCAGTTGACA GAAGTGAGCG TTGAGTCATA G

[show][hide][copy]PROTEIN

>Vigan.03G094300.01
MATEEVNKPQ SLPPYPELIL KAIEALSEPS GSSKSAISKY IEAIYGELTD STVLGNELNK MKESGELVFN KNNYMKADPS
APPKRGRGRP PKPKAPVPPG TVVSPPRPRG RPPKDPNAPP KSPKPKPTPG SGRPRGRPKK IPRSPTAAYP AAVSSGRPRG
RPPKVKPQLT EVSVES*