GBrowse Details

Vigan.03G095300.01

Basic Information:
Name: Vigan.03G095300.01
Multiple alignment
Variant Information
Position: Chr03:9700508..9701978 (- strand)
Length: 1471
Functional Information:
Description: Similar to Uncharacterized protein. [B0M1A7, Glycine max]
InterPro: Alpha crystallin/Hsp20 domain (IPR002068)
HSP20-like chaperone (IPR008978)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:79.65,66.79,32.64,23.32,55.24,24.82,2.35,44.54
Arabidopsis thaliana homolog: AT5G37670.1
Automatic updates:
Name: NM_001251515 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peroxisomal small heat shock protein (LOC100170732), mRNA.
PubMed ID: 18281324 NCBI(pubmed)
Status: Known Variant
Name: NM_001253036 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 15.7 kDa heat shock protein, peroxisomal-like (LOC100802108), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:9700508..9700961 (- strand)
Length: 454
Type: three_prime_UTR
Position: Chr03:9700962..9701254 (- strand)
Length: 293
Type: CDS
Position: Chr03:9701597..9701738 (- strand)
Length: 142
Type: CDS
Position: Chr03:9701739..9701978 (- strand)
Length: 240
Type: five_prime_UTR


>Vigan.03G095300.01
AGTGAATCAC TTTGCACTTC GCTATTGGGG AAGAACCCAG AACAGTAGAT AATTTGATTG GAGACGACAC AAGATCAAAG
AACATTCTGG AGTGTCCGCG ACAACTCCTA TCATAAACAC ATAAAATATA TAATAATTTC ATTGTTCATC ACAAAAATTG
CGAGAACCAT ATCATTCATC GGTCTTTTTT ATTTTTTTCC TTTTTCTGCT ACATTTCTCT TTACACTGGT GTAATCAACA
ATGGCTGACA CTATCTTTGG GTACCCTCTC AGACGCTTAT TCTGGAGTCG TCCTCCAATT CTCACTGAAT GGTCTGGCTC
CACGGCCCTC TTGGATTGGC TCGAATCACC TAATGCCCAC ATCTTAAAAA TTAACGTTCC AGGATTCAGC AAGGATGACA
TAAAGGTGCA GATTGAGGAT GGAAATGTTC TACACATCAA AGGGGAAGGT GGGAGAGAGG AGCCTCAAGC AAAGGAGAAA
GATACTGTTT GTCATGTTGC TGAGAGAGGC ACCGGGAATG GGGCTTTCTC AAGGGAAATT GAATTGCCAG AAAATGTCAA
GGTGGATCAG ATCAAAGCAC AGGTGGAAAA TGGTGTCCTC ACTATACTTT TGCCTAAACA CACAACTACC AAATCGCCTA
AAGTGAGAAA CATTAACATC ACTAGCAGGC TTTAAGCTTT TCAGATCTAG AATATGTTTA TATGAATAAG AATCCAGGGA
TAAAAATATC TTCATGATGT AAACAATACA AGACCATATA AGTTCTTTTG TGTGTGTGTG TGTGTGGCTT GATATGTAGT
TATGAACTTG TGTAACTTTC TGAATAGCTA ATTTAGTATG AAAAAGAGCA TAGTTTGTTC CAAAGTTCAA CAAGCCAAAT
CAGAGTCACC AAACAACATA ACTTGATTAC TTCTGCAACT GTAACAACAT TCATGTTCTC ACTTAGCATC GGTACGGAAT
TAGCTATCAA TAATGTATAC TTATATAGGA GTTGCCATTG CCAACTAGAT TTAAGAGGAA CACGAGGTTG TGGAGAATGG
TAGATGGATT AGACTAAAGT GGAGAAAAGG TAGTCTAAAG AGATTTGATT GTCAGTTGAA CTGATACTGT GAGTTTATTG
CTTAAGGCC

>Vigan.03G095300.01
ATGGCTGACA CTATCTTTGG GTACCCTCTC AGACGCTTAT TCTGGAGTCG TCCTCCAATT CTCACTGAAT GGTCTGGCTC
CACGGCCCTC TTGGATTGGC TCGAATCACC TAATGCCCAC ATCTTAAAAA TTAACGTTCC AGGATTCAGC AAGGATGACA
TAAAGGTGCA GATTGAGGAT GGAAATGTTC TACACATCAA AGGGGAAGGT GGGAGAGAGG AGCCTCAAGC AAAGGAGAAA
GATACTGTTT GTCATGTTGC TGAGAGAGGC ACCGGGAATG GGGCTTTCTC AAGGGAAATT GAATTGCCAG AAAATGTCAA
GGTGGATCAG ATCAAAGCAC AGGTGGAAAA TGGTGTCCTC ACTATACTTT TGCCTAAACA CACAACTACC AAATCGCCTA
AAGTGAGAAA CATTAACATC ACTAGCAGGC TTTAA

>Vigan.03G095300.01
MADTIFGYPL RRLFWSRPPI LTEWSGSTAL LDWLESPNAH ILKINVPGFS KDDIKVQIED GNVLHIKGEG GREEPQAKEK
DTVCHVAERG TGNGAFSREI ELPENVKVDQ IKAQVENGVL TILLPKHTTT KSPKVRNINI TSRL*