GBrowse Details

Vigan.03G095600.01

Basic Information:
Name: Vigan.03G095600.01
Multiple alignment
Variant Information
Position: Chr03:9733582..9737331 (+ strand)
Length: 3750
Functional Information:
Description: Similar to Glutamine synthetase N-1. [P00965, Phaseolus vulgaris]
GO: Biological Process: glutamine biosynthetic process (GO:0006542)
Biological Process: nitrogen compound metabolic process (GO:0006807)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glutamate-ammonia ligase activity (GO:0004356)
InterPro: Glutamine synthetase, catalytic domain (IPR008146)
Glutamine synthetase, beta-Grasp (IPR008147)
Glutamine synthetase/guanido kinase, catalytic domain (IPR014746)
Glutamine synthetase, N-terminal conserved site (IPR027302)
Glutamine synthetase, glycine-rich site (IPR027303)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.27,2.82,152.42,6.47,75.00,104.23,3.77,25.87
Arabidopsis thaliana homolog: AT1G48470.1, AT1G66200.3, AT3G17820.1, AT5G16570.1, AT5G35630.1, AT5G37600.1
Automatic updates:
Name: NM_001353640 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max gamma glutamine synthetase (GS1-GAMMA), mRNA.
PubMed ID: 25497014 NCBI(pubmed)
20504761 NCBI(pubmed)
8104530 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:9733582..9733809 (+ strand)
Length: 228
Type: five_prime_UTR
Position: Chr03:9733810..9733883 (+ strand)
Length: 74
Type: CDS
Position: Chr03:9734006..9734045 (+ strand)
Length: 40
Type: CDS
Position: Chr03:9734695..9734798 (+ strand)
Length: 104
Type: CDS
Position: Chr03:9734927..9734975 (+ strand)
Length: 49
Type: CDS
Position: Chr03:9735086..9735192 (+ strand)
Length: 107
Type: CDS
Position: Chr03:9735299..9735386 (+ strand)
Length: 88
Type: CDS
Position: Chr03:9735680..9735808 (+ strand)
Length: 129
Type: CDS
Position: Chr03:9735935..9736009 (+ strand)
Length: 75
Type: CDS
Position: Chr03:9736095..9736148 (+ strand)
Length: 54
Type: CDS
Position: Chr03:9736348..9736385 (+ strand)
Length: 38
Type: CDS
Position: Chr03:9736489..9736648 (+ strand)
Length: 160
Type: CDS
Position: Chr03:9736875..9737027 (+ strand)
Length: 153
Type: CDS
Position: Chr03:9737028..9737331 (+ strand)
Length: 304
Type: three_prime_UTR


>Vigan.03G095600.01
TTTTCTTTAA GCTCTTTGAA AATATAAGAA TATTATTCTT ACAGGTGAAA ATACGCATTC TGTTACAGTT TTATCTTGGT
TTTATTACTT GGTTTGGAAA CTGGGAGCTA GCACAAGCAC AAACACTATA AAACCCACTG CAACAACTTT GTATCCACGC
ACTGAAAGGA AGAGAAAGAA AAAAATTATC TGCAAAGAGT CTCTGCTGAA AGTTTTGGTT TCCTGAGGAT GTCGTCACTC
TCCGATCTTG TTAACCTTAA TCTCTCCGAC TCCACGGAGA AGGTGATCGC CGAGTACATA TGGGTTGGTG GATCTGGCAT
AGACATGAGG AGCAAAGCAA GGACTCTGTC TGGACCGGTT GAAGACCCTT CGAAACTTCC AAAGTGGAAC TACGATGGTT
CCAGCACAGG TCAAGCTCCT GGGCAAGATA GTGAAGTTAT CTTATACCCC CAAACAATTT TCAGGGATCC ATTCAGGAGG
GGTAACAATA TCCTGGTTAT GTGTGACGCT TACACTCCTG CTGGGGAACC CATCCCTACC AACAAGAGAC ATAATGCGGC
AAAGATATTT AGCCATCCTG ATGTTGTTGC TGAAGAGCCC TGGTATGGCA TCGAGCAGGA ATATACCTTG TTGCAGAAAG
ATGTTCAGTG GCCTGTTGGA TGGCCTCTTG GCGGTTTTCC TGGGGCCCAG GGACCGTACT ATTGTGGTAT TGGTGCTAAC
AAGGCTTTCG GGCGTGATAT TGTTGACTCC CATTACAAAG CATGTCTTTA TGCTGGCATT AACATAAGTG GAATTAATGG
AGAAGTGATG CCTGGTCAGT GGGAATTCCA AGTTGGTCCA TCGGTGGGCA TCTCTGCTGC TGACGAGTTA TGGGTTGCCC
GTTACATTTT GGAGAGAATA ACTGAGATTG CAGGAGTGGT ACTTTCCTTT GATCCTAAAC CGATTCAGGG TGATTGGAAT
GGTGCTGGTG CTCACACGAA TTACAGTACC GAGTCCATGA GAAACGATGG TGGCTATGAA GTCATCAAAA AAGCAATCAG
CAAGTTGGAA AAGAGGCACA AGGAGCACAT TGCTGCTTAT GGAGAAGGCA ACGAACGTCG TTTGACAGGA AAACACGAGA
CAGCGGACAT GAACACCTTC ATATGGGGTG TTGCGAACCG TGGTGCTTCA ATCAGGGTAG GGAGGGACAC AGAGAAGAAA
GGGAAGGGAT ACTTTGAGGA TAGGAGGCCT GCATCTAACA TGGACCCTTA CGTCGTCACT TCCATGATTG CTCAGACAAC
CATTCTTTGG AAACCATAAG CAACCTAAAA ACACAACCAC AAATGGCTTC TGCTATGCAT AGTTGGTTCT ACCTTAGAAT
TATCAATTTG TTCATTTCTG TTGTGTGTGC GCTCTTGTTT TGTGACCAGC TTGCCTGATG TTAGGCATTG TTGCTTCCTT
CCCTCAATGA ACGTTTTAAG TTTTAGAATA ATAATGGTAT GGCTTTCAAG TATTTGTGTT ATGTTGTTCG GTTCGAATTT
CTTTTCGTGA AGCATTTCGG GTTTCTGTTT GACCAAACAA AGTGCATGCG CATCTCTATC TCTGCGTCTG TCTAAAATGT
CTG

>Vigan.03G095600.01
ATGTCGTCAC TCTCCGATCT TGTTAACCTT AATCTCTCCG ACTCCACGGA GAAGGTGATC GCCGAGTACA TATGGGTTGG
TGGATCTGGC ATAGACATGA GGAGCAAAGC AAGGACTCTG TCTGGACCGG TTGAAGACCC TTCGAAACTT CCAAAGTGGA
ACTACGATGG TTCCAGCACA GGTCAAGCTC CTGGGCAAGA TAGTGAAGTT ATCTTATACC CCCAAACAAT TTTCAGGGAT
CCATTCAGGA GGGGTAACAA TATCCTGGTT ATGTGTGACG CTTACACTCC TGCTGGGGAA CCCATCCCTA CCAACAAGAG
ACATAATGCG GCAAAGATAT TTAGCCATCC TGATGTTGTT GCTGAAGAGC CCTGGTATGG CATCGAGCAG GAATATACCT
TGTTGCAGAA AGATGTTCAG TGGCCTGTTG GATGGCCTCT TGGCGGTTTT CCTGGGGCCC AGGGACCGTA CTATTGTGGT
ATTGGTGCTA ACAAGGCTTT CGGGCGTGAT ATTGTTGACT CCCATTACAA AGCATGTCTT TATGCTGGCA TTAACATAAG
TGGAATTAAT GGAGAAGTGA TGCCTGGTCA GTGGGAATTC CAAGTTGGTC CATCGGTGGG CATCTCTGCT GCTGACGAGT
TATGGGTTGC CCGTTACATT TTGGAGAGAA TAACTGAGAT TGCAGGAGTG GTACTTTCCT TTGATCCTAA ACCGATTCAG
GGTGATTGGA ATGGTGCTGG TGCTCACACG AATTACAGTA CCGAGTCCAT GAGAAACGAT GGTGGCTATG AAGTCATCAA
AAAAGCAATC AGCAAGTTGG AAAAGAGGCA CAAGGAGCAC ATTGCTGCTT ATGGAGAAGG CAACGAACGT CGTTTGACAG
GAAAACACGA GACAGCGGAC ATGAACACCT TCATATGGGG TGTTGCGAAC CGTGGTGCTT CAATCAGGGT AGGGAGGGAC
ACAGAGAAGA AAGGGAAGGG ATACTTTGAG GATAGGAGGC CTGCATCTAA CATGGACCCT TACGTCGTCA CTTCCATGAT
TGCTCAGACA ACCATTCTTT GGAAACCATA A

>Vigan.03G095600.01
MSSLSDLVNL NLSDSTEKVI AEYIWVGGSG IDMRSKARTL SGPVEDPSKL PKWNYDGSST GQAPGQDSEV ILYPQTIFRD
PFRRGNNILV MCDAYTPAGE PIPTNKRHNA AKIFSHPDVV AEEPWYGIEQ EYTLLQKDVQ WPVGWPLGGF PGAQGPYYCG
IGANKAFGRD IVDSHYKACL YAGINISGIN GEVMPGQWEF QVGPSVGISA ADELWVARYI LERITEIAGV VLSFDPKPIQ
GDWNGAGAHT NYSTESMRND GGYEVIKKAI SKLEKRHKEH IAAYGEGNER RLTGKHETAD MNTFIWGVAN RGASIRVGRD
TEKKGKGYFE DRRPASNMDP YVVTSMIAQT TILWKP*