GBrowse Details

Vigan.03G105800.01

Basic Information:
Name: Vigan.03G105800.01
Multiple alignment
Variant Information
Position: Chr03:10950372..10954374 (+ strand)
Length: 4003
Functional Information:
Description: Similar to Trans-cinnamate 4-monooxygenase. [P37115, Vigna radiata var. radiata]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome P450 (IPR001128)
Cytochrome P450, E-class, group I (IPR002401)
Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:59.28,2.41,62.57,88.89,135.81,160.37,279.65,125.47
Arabidopsis thaliana homolog: AT2G30490.1
Automatic updates:
Name: NM_001250388 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max trans-cinnamate 4-monooxygenase (C4H), mRNA.
PubMed ID: 26856401 NCBI(pubmed)
20430761 NCBI(pubmed)
9648734 NCBI(pubmed)
Status: Known Variant
Name: NM_001279222 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum trans-cinnamic 4-monooxygenase (CYP73), mRNA.
PubMed ID: 10773344 NCBI(pubmed)
Status: Known Variant
Name: NM_001317148 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata trans-cinnamate 4-monooxygenase (LOC106764845), mRNA.
PubMed ID: 26177103 NCBI(pubmed)
8439336 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:10950372..10950692 (+ strand)
Length: 321
Type: five_prime_UTR
Position: Chr03:10950693..10951477 (+ strand)
Length: 785
Type: CDS
Position: Chr03:10952383..10952516 (+ strand)
Length: 134
Type: CDS
Position: Chr03:10953408..10954006 (+ strand)
Length: 599
Type: CDS
Position: Chr03:10954007..10954374 (+ strand)
Length: 368
Type: three_prime_UTR


>Vigan.03G105800.01
CTAATAGTTA ATTAGACACG TGGCCTCCTC ACATCACATC CACTACTTAA TACTACTACT ACTACTACAA TCACACAATT
AAAATAGATA ATATAATTTG GTTAATAAAT TGTTAGAAAG AAAATAAAAC GAGACATAGT CGTAGGACGT GCGTAAGAAA
CACAACACAC GAACCACAAG CTCCACCTAA CACCCTTCCA GCTACCGTCA CAATCTCTTC TATAAAACCC CCAACCGCGC
CACGCTTCCC AAATCACTCA ACAAACCAAA TAAACCAAAC CGTACCACTT TTTTTCAATT CACCACCGTC ACGTCACCAA
AATGGATCTC CTCCTACTGG AGAAGACCCT CCTCGGCCTC TTCCTAGCGG CGGTGGTTGC CATTGTTGTC TCCAAGCTCC
GCGGCAAGCG CTTCAAGCTC CCGCCGGGCC CACTCCCTGT TCCCATCTTC GGCAACTGGC TCCAGGTTGG CGACGACCTC
AACCACCGCA ACCTCACTCA ACTCGCCAAG CGCTTCGGCG ACATCTTCCT CCTCCGCATG GGGCAGCGCA ACCTGGTCGT
GGTTTCCTCG CCGGACCTCG CCAAGGAGGT GCTGCACACT CAGGGAGTGG AGTTCGGCTC CCGCACCCGC AACGTCGTCT
TCGACATCTT CACCGGCGAG GGCCAGGACA TGGTCTTCAC CGTCTACGGC GAGCACTGGC GCAAGATGCG ACGCATCATG
ACCGTGCCCT TCTTCACCAA CAAGGTCGTC CAGCAGTACC GCCACGGTTG GGAGGCGGAG GCCGCCGCCG TTGTGGACGA
CGTCAGGAAG AATCCCGAAG CGGCAGTCTC CGGCGTGGTG ATCCGCCGCA GGCTCCAGCT CATGATGTAC AACAACATGT
ACCGCATCAT GTTCGACCGG AGATTCGAGA GCGAGGAGGA CCCTCTGTTC CAGCGTCTCA GAGCGCTGAA CGGCGAGAGG
AGTCGGTTGG CTCAGAGCTT TGAGTATAAC TATGGCGATT TCATTCCCAT CTTGAGACCC TTCTTGAAGG GTTACTTGAA
GATTTGCAAG GAGGTGAAAG AAACCAGGTT GAAGCTTTTC AAGGATTACT TCGTGGACGA GAGGAAGAAT ATTGGAAGCA
CGAAGAGCAC TAACAACGAA GGACTTAAAT GTGCTATTGA TCACATTTTG GATGCTGAGA AAAAGGGCGA GATCAACGAA
GACAACGTAC TTTACATTGT TGAGAACATC AACGTTGCTG CAATTGAAAC AACTCTCTGG TCAATTGAAT GGGGTATTGC
TGAGCTTGTG AACCATCCAG AGATTCAGCA GAAAGTGAGG GATGAAATTG ACAGAGTTCT TGGAGCAGGG CATCAGGTGA
CTGAGCCAGA TATCCAAAAG CTTCCATACC TTCAAGCAGT GGTGAAGGAA ACCCTTCGCC TCAGAATGGC AATCCCTCTC
CTTGTCCCAC ACATGAACCT CCACGATGCT AAGCTTGGTG GCTTTGACAT CCCAGCTGAA AGCAAGATTT TGGTGAATGC
ATGGTGGCTG GCGAACAACC CTGCACACTG GAAGAAGCCA GAAGAGTTCA GGCCTGAGAG GTTCTTCGAA GAGGAATCGC
ATGTGGAAGC GAATGGCAAT GACTTCAGGT ACCTTCCCTT TGGTGTTGGG AGAAGAAGCT GCCCCGGAAT CATTCTTGCA
TTGCCCATTC TTGGCATCAC TTTGGGACAA TTGGTCCAAA ACTTTGAGCT CTTGCCTCCC CCTGGGCAGT CCCAGATTGA
CACCAGTGAG AAAGGAGGAC AGTTTAGCTT GCACATACTA AAGCATTCCA CCATTGTTGC AAAGCCAAGG TCCTTTTAGA
CTTCACCACA TCATCATTAC CAATCCCCTT TATTATTTTT TCTTTCTTAC TCTCCCTGTA TTATCGATCT TTCAAAATGG
GGTTGCTCCA TGCCATGTAT AATTGGCCTC CTGATGGGTA GGTGGTGATG TATCTGTTGG TCCCATTGTA ATTCTCTCAC
AACTTCAACT CATGAATGAT TTTGAGATGG TTTTGTAATA AACTTACACT TTTGTCTCTA ATACTTCACC CACATTTCAT
CTCTCGTTCT CACCACCGTT CGTTGTACTT TCCATGTTAG GTGTGATGTC ACTCTTTTCC TTGAATTATA ACGTAATAGA
AGAAAAATAA TCAAGAAAAT AAAAGCTGAT TCTAATTTTT TACTCAA

>Vigan.03G105800.01
ATGGATCTCC TCCTACTGGA GAAGACCCTC CTCGGCCTCT TCCTAGCGGC GGTGGTTGCC ATTGTTGTCT CCAAGCTCCG
CGGCAAGCGC TTCAAGCTCC CGCCGGGCCC ACTCCCTGTT CCCATCTTCG GCAACTGGCT CCAGGTTGGC GACGACCTCA
ACCACCGCAA CCTCACTCAA CTCGCCAAGC GCTTCGGCGA CATCTTCCTC CTCCGCATGG GGCAGCGCAA CCTGGTCGTG
GTTTCCTCGC CGGACCTCGC CAAGGAGGTG CTGCACACTC AGGGAGTGGA GTTCGGCTCC CGCACCCGCA ACGTCGTCTT
CGACATCTTC ACCGGCGAGG GCCAGGACAT GGTCTTCACC GTCTACGGCG AGCACTGGCG CAAGATGCGA CGCATCATGA
CCGTGCCCTT CTTCACCAAC AAGGTCGTCC AGCAGTACCG CCACGGTTGG GAGGCGGAGG CCGCCGCCGT TGTGGACGAC
GTCAGGAAGA ATCCCGAAGC GGCAGTCTCC GGCGTGGTGA TCCGCCGCAG GCTCCAGCTC ATGATGTACA ACAACATGTA
CCGCATCATG TTCGACCGGA GATTCGAGAG CGAGGAGGAC CCTCTGTTCC AGCGTCTCAG AGCGCTGAAC GGCGAGAGGA
GTCGGTTGGC TCAGAGCTTT GAGTATAACT ATGGCGATTT CATTCCCATC TTGAGACCCT TCTTGAAGGG TTACTTGAAG
ATTTGCAAGG AGGTGAAAGA AACCAGGTTG AAGCTTTTCA AGGATTACTT CGTGGACGAG AGGAAGAATA TTGGAAGCAC
GAAGAGCACT AACAACGAAG GACTTAAATG TGCTATTGAT CACATTTTGG ATGCTGAGAA AAAGGGCGAG ATCAACGAAG
ACAACGTACT TTACATTGTT GAGAACATCA ACGTTGCTGC AATTGAAACA ACTCTCTGGT CAATTGAATG GGGTATTGCT
GAGCTTGTGA ACCATCCAGA GATTCAGCAG AAAGTGAGGG ATGAAATTGA CAGAGTTCTT GGAGCAGGGC ATCAGGTGAC
TGAGCCAGAT ATCCAAAAGC TTCCATACCT TCAAGCAGTG GTGAAGGAAA CCCTTCGCCT CAGAATGGCA ATCCCTCTCC
TTGTCCCACA CATGAACCTC CACGATGCTA AGCTTGGTGG CTTTGACATC CCAGCTGAAA GCAAGATTTT GGTGAATGCA
TGGTGGCTGG CGAACAACCC TGCACACTGG AAGAAGCCAG AAGAGTTCAG GCCTGAGAGG TTCTTCGAAG AGGAATCGCA
TGTGGAAGCG AATGGCAATG ACTTCAGGTA CCTTCCCTTT GGTGTTGGGA GAAGAAGCTG CCCCGGAATC ATTCTTGCAT
TGCCCATTCT TGGCATCACT TTGGGACAAT TGGTCCAAAA CTTTGAGCTC TTGCCTCCCC CTGGGCAGTC CCAGATTGAC
ACCAGTGAGA AAGGAGGACA GTTTAGCTTG CACATACTAA AGCATTCCAC CATTGTTGCA AAGCCAAGGT CCTTTTAG

>Vigan.03G105800.01
MDLLLLEKTL LGLFLAAVVA IVVSKLRGKR FKLPPGPLPV PIFGNWLQVG DDLNHRNLTQ LAKRFGDIFL LRMGQRNLVV
VSSPDLAKEV LHTQGVEFGS RTRNVVFDIF TGEGQDMVFT VYGEHWRKMR RIMTVPFFTN KVVQQYRHGW EAEAAAVVDD
VRKNPEAAVS GVVIRRRLQL MMYNNMYRIM FDRRFESEED PLFQRLRALN GERSRLAQSF EYNYGDFIPI LRPFLKGYLK
ICKEVKETRL KLFKDYFVDE RKNIGSTKST NNEGLKCAID HILDAEKKGE INEDNVLYIV ENINVAAIET TLWSIEWGIA
ELVNHPEIQQ KVRDEIDRVL GAGHQVTEPD IQKLPYLQAV VKETLRLRMA IPLLVPHMNL HDAKLGGFDI PAESKILVNA
WWLANNPAHW KKPEEFRPER FFEEESHVEA NGNDFRYLPF GVGRRSCPGI ILALPILGIT LGQLVQNFEL LPPPGQSQID
TSEKGGQFSL HILKHSTIVA KPRSF*