VIGGS:GBrowse

Vigan.03G110100.01

Basic Information:

Name:	Vigan.03G110100.01 Multiple alignment Variant Information
Position:	Chr03:11549942..11552590 (+ strand)
Length:	2649

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MBJ0, Glycine max]
InterPro:	GCN5-like 1 (IPR009395)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:15.05,7.90,8.34,7.01,13.83,11.64,6.35,6.75
Arabidopsis thaliana homolog:	AT2G30330.1

Automatic updates:

Name:	NM_001248677 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max biogenesis of lysosome-related organelles complex 1 subunit 1-like (LOC100305965), transcript variant 2, mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001363801 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max biogenesis of lysosome-related organelles complex 1 subunit 1-like (LOC100305965), transcript variant 1, mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr03:11549942..11550052 (+ strand)
Length:	111
Type:	five_prime_UTR

Position:	Chr03:11550053..11550167 (+ strand)
Length:	115
Type:	CDS

Position:	Chr03:11550252..11550457 (+ strand)
Length:	206
Type:	CDS

Position:	Chr03:11551593..11551682 (+ strand)
Length:	90
Type:	CDS

Position:	Chr03:11551683..11552590 (+ strand)
Length:	908
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.03G110100.01
CTTTCTTCTA TTTTGCTTTT GAAGCAAAAA CAGGGCGAAA CCAATACTGC ATTGGGAAAT TTGCAGGGAA AGTTCTTGCG
ACGAACCGGA AGAAAAGGGG CTCAGAATCG AATGAATGGA AAAGGGTCTG TGGGAATGGA GGGAGAACCA AAAGGGTTAG
AAGCTTCACT GCACCATTTG CTCGAACTCC ACCATCACAA ATCTCTCGTC CTTACCCAAC GCACAGAGAA AGCCAAAAAG
GACGCCATCA GGAAAACCGC GCGCGTTTCT GATCTGTTGG TGGAAGCAGT CAATGGCGGG GTGCATGAGT CCTTCATCAA
CCAGAAGCGA ATTGAGCTCG AAATTCGAGC CCTTGCTGTC ACCATCACAA GGTTCATGAA GCAAACTGAT CAGTGGCTCG
CTACCACTCA TGCCCTCAAC ACTGCTCTCA AGGAAATTGG AGACTTCGAG AACTGGATGA AGATCATGGA ATATGATTGT
AAAAATATCA CCACAGCTAT ACAGAATATT CACCAAGAGT GATACTACTG CAATTGTTCG TGCATGTCAC CATGTAATTC
TAATTATCTA ATCCCTTTTC ATTAGTTTTT TTTCTATTCT AAGCATAATA CCAAATATCA TGCATTAGTT TTAGATAACC
ATTTGCCTTT ATTTTCAGTT TAGTAATTTC CTTGAAGAAG GAAAGATTGA TTATCACCCT TATTCTTAAT AAGTTATGTT
CTGCTATCAT TTGACTTTGT AAATGTTCAA ATTTGAAATT TTCTTCTCTA CTAACTATAA AGCTTTTGAG TGTATAAAGG
AACAAAAGAA AAAATAATGA TGCTTTGTCT TTGTGATTTT GTCATAGAGC ATTGTGTATT TGGATATAAT AGATAAATAG
AGCAAAGTTC CCGAAATTTT AGCAATAATC ATCTCCCGTC AGCAATTTTG CTGAACAGTC TTGTATTCCA GTTGTTTTGC
GGGCCTTTGC CCGTGAATAT ATTTTTGCAA ATTTTATCTA TACATTTTCT AGTAGTTTTT TTAAGTCATA CTTGCAGAGG
GATTTGAGCT ATTTATTCAC TCTTTCCCCT GTTTCTGCTT TCTTGTAGCA CTTGAAACAT GTTTGTCAAA TTTAAAAGTC
TATGCATACT CATGGAGTGT CAATGGACTC TACTAATATA CTCACATCAC ATAAACTCAC AAGTGTTTGT GATATAAAAT
CATTCCTAAA AACCAGGTGG GAAATATTAC TTCAGTTTAG AAATGGCAAA TGAATCCTTC TTCGTGGTAT TGTCTGAAGC
AATCCTAATT TTGACAGAAA TTTCCGATTG ATTGAATATA GATATGAGTA ATATTTGATT TTGTAAATTA GATATTTGGA
CAAGGATGTT TATATACATA TCCTCGTTTC TGTCCTTATA GCTGTCTTTG TCCTCGTTTT GGTATCCGTC

[show][hide][copy]CDS

>Vigan.03G110100.01
ATGAATGGAA AAGGGTCTGT GGGAATGGAG GGAGAACCAA AAGGGTTAGA AGCTTCACTG CACCATTTGC TCGAACTCCA
CCATCACAAA TCTCTCGTCC TTACCCAACG CACAGAGAAA GCCAAAAAGG ACGCCATCAG GAAAACCGCG CGCGTTTCTG
ATCTGTTGGT GGAAGCAGTC AATGGCGGGG TGCATGAGTC CTTCATCAAC CAGAAGCGAA TTGAGCTCGA AATTCGAGCC
CTTGCTGTCA CCATCACAAG GTTCATGAAG CAAACTGATC AGTGGCTCGC TACCACTCAT GCCCTCAACA CTGCTCTCAA
GGAAATTGGA GACTTCGAGA ACTGGATGAA GATCATGGAA TATGATTGTA AAAATATCAC CACAGCTATA CAGAATATTC
ACCAAGAGTG A

[show][hide][copy]PROTEIN

>Vigan.03G110100.01
MNGKGSVGME GEPKGLEASL HHLLELHHHK SLVLTQRTEK AKKDAIRKTA RVSDLLVEAV NGGVHESFIN QKRIELEIRA
LAVTITRFMK QTDQWLATTH ALNTALKEIG DFENWMKIME YDCKNITTAI QNIHQE*