GBrowse Details

Vigan.03G112800.01

Basic Information:
Name: Vigan.03G112800.01
Multiple alignment
Variant Information
Position: Chr03:11988993..11992753 (+ strand)
Length: 3761
Functional Information:
Description: Similar to U2 small nuclear ribonucleoprotein B'' 2-like. [XP_004490682.1, Cicer arietinum]
GO: Biological Process: mRNA splicing, via spliceosome (GO:0000398)
Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: snRNA binding (GO:0017069)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B'' (IPR024888)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:65.21,79.35,26.81,21.06,43.31,53.17,33.14,23.22
Arabidopsis thaliana homolog: AT2G30260.1
Automatic updates:
Name: NM_001250958 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499914 (LOC100499914), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254349 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max U2 small nuclear ribonucleoprotein B''-like (LOC100805822), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr03:11988993..11989095 (+ strand)
Length: 103
Type: five_prime_UTR
Position: Chr03:11989096..11989168 (+ strand)
Length: 73
Type: CDS
Position: Chr03:11990054..11990226 (+ strand)
Length: 173
Type: CDS
Position: Chr03:11990742..11990835 (+ strand)
Length: 94
Type: CDS
Position: Chr03:11991721..11991803 (+ strand)
Length: 83
Type: CDS
Position: Chr03:11992213..11992488 (+ strand)
Length: 276
Type: CDS
Position: Chr03:11992489..11992753 (+ strand)
Length: 265
Type: three_prime_UTR


>Vigan.03G112800.01
CCCATAATAA AAACAACGTT TTGTTTCTAA GCTTCGTCTC TGCTGGCTAG GGCACCACCG TTACACTGTG TTCATTCATC
TCAATCAGAA AGAGAGAGAG AGAATGTTAT CAGGGGACAT ACCTCCAAAC CAGACCATTT ACATCAAGAA TCTCAATGAG
AAGGTCAAGA AAGACGAGTT GAAGAGATCT CTGTATTGCT TGTTCTCTCA ATATGGAAGG ATTTTGGATG TTGTTGCTCT
AAAGACACCC AGGCTTCGAG GACAGGCATG GGTTTGTTTC AGTGAAGTCA CTGCAGCCAG CAATGCTGTG AGACAAATGC
AAAACTTCCC ATTTTATGAA AAACCTATGA GAATTCAATA TGCAAAAACA AAGTCCGATT GTATTGCAAA AGAAGAGGGT
AGTTATGTTC CAAGGGAAAA GAAGAAGAAA CAAGAGGAGA AAGCTGAAAG AAAGCGGCGT GCTGAGGAAG CACAACAATC
TGCTGCGGCT AATGGCATAC ATGGTGCTAG TAATGGTGGT CCAACTGCAT CATTCCGTCA AGGATCCAGT GCCCAAGAAG
CAGCTGCTCC TAATAATATT TTATTCATAG AGAATTTGCC TCATGAAACT ACTGGTAGGA TGCTTGAAAT GCTCTTCGAA
CAATACCCAG GTTTCAAGGA AGTGCGCTTG ATTGAAGCCA AGCCAGGAAT TGGATTTGTT GATTTTGAAG ATGAGGTGCA
ATCATCCATG GCCATGCAGG CTCTCAATGG CTTCAAAATC ACTCCACTGA ATCCCATGAA TATAACCTTT GCTAAGAAGT
AGCTTATCCG TTTTCTGTAG TCTGTATTTT TGTAGATCTT TAAGAAACTA ATTGCAGACA TTGTAAGTTT ACCGGAAGTC
AAACCAGCAA GGCAGAGTAA GAATTCAACC ACGTTTGTGG AAAGGTTGAT ATAGTGCTGT TATAATGTTT ATTGATTTTG
TGGTTTAATT TTAGTTTTAT CACTCAAATA TGTCCATTGG AACATTGTAA TAGGGGCTGA AGAGTCAAGA AAGGAAATAA
AAAAAAACAA AACTAGTGAT GTGGTAA

>Vigan.03G112800.01
ATGTTATCAG GGGACATACC TCCAAACCAG ACCATTTACA TCAAGAATCT CAATGAGAAG GTCAAGAAAG ACGAGTTGAA
GAGATCTCTG TATTGCTTGT TCTCTCAATA TGGAAGGATT TTGGATGTTG TTGCTCTAAA GACACCCAGG CTTCGAGGAC
AGGCATGGGT TTGTTTCAGT GAAGTCACTG CAGCCAGCAA TGCTGTGAGA CAAATGCAAA ACTTCCCATT TTATGAAAAA
CCTATGAGAA TTCAATATGC AAAAACAAAG TCCGATTGTA TTGCAAAAGA AGAGGGTAGT TATGTTCCAA GGGAAAAGAA
GAAGAAACAA GAGGAGAAAG CTGAAAGAAA GCGGCGTGCT GAGGAAGCAC AACAATCTGC TGCGGCTAAT GGCATACATG
GTGCTAGTAA TGGTGGTCCA ACTGCATCAT TCCGTCAAGG ATCCAGTGCC CAAGAAGCAG CTGCTCCTAA TAATATTTTA
TTCATAGAGA ATTTGCCTCA TGAAACTACT GGTAGGATGC TTGAAATGCT CTTCGAACAA TACCCAGGTT TCAAGGAAGT
GCGCTTGATT GAAGCCAAGC CAGGAATTGG ATTTGTTGAT TTTGAAGATG AGGTGCAATC ATCCATGGCC ATGCAGGCTC
TCAATGGCTT CAAAATCACT CCACTGAATC CCATGAATAT AACCTTTGCT AAGAAGTAG

>Vigan.03G112800.01
MLSGDIPPNQ TIYIKNLNEK VKKDELKRSL YCLFSQYGRI LDVVALKTPR LRGQAWVCFS EVTAASNAVR QMQNFPFYEK
PMRIQYAKTK SDCIAKEEGS YVPREKKKKQ EEKAERKRRA EEAQQSAAAN GIHGASNGGP TASFRQGSSA QEAAAPNNIL
FIENLPHETT GRMLEMLFEQ YPGFKEVRLI EAKPGIGFVD FEDEVQSSMA MQALNGFKIT PLNPMNITFA KK*