GBrowse Details

Vigan.03G117100.01

Basic Information:
Name: Vigan.03G117100.01
Multiple alignment
Variant Information
Position: Chr03:12549977..12558283 (+ strand)
Length: 8307
Functional Information:
Description: Similar to Uncharacterized protein. [I1KGP3, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity (GO:0004571)
Molecular Function: calcium ion binding (GO:0005509)
InterPro: Glycoside hydrolase, family 47 (IPR001382)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:34.95,21.50,19.49,19.42,17.08,17.62,25.95,17.48
Arabidopsis thaliana homolog: AT1G51590.1, AT3G21160.1
Automatic updates:
Name: NM_001251128 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mannosyl-oligosaccharide 1,2-alpha-mannosidase (MAN1), mRNA.
PubMed ID: 23173047 NCBI(pubmed)
18927222 NCBI(pubmed)
10594100 NCBI(pubmed)
Status: Known Variant
Name: NM_001401201 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max mannosyl-oligosaccharide 1,2-alpha-mannosidase (MAN1), mRNA.
PubMed ID: 23173047 NCBI(pubmed)
18927222 NCBI(pubmed)
10594100 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr03:12549977..12550247 (+ strand)
Length: 271
Type: five_prime_UTR
Position: Chr03:12550248..12550406 (+ strand)
Length: 159
Type: CDS
Position: Chr03:12551023..12551070 (+ strand)
Length: 48
Type: CDS
Position: Chr03:12551529..12551714 (+ strand)
Length: 186
Type: CDS
Position: Chr03:12552090..12552202 (+ strand)
Length: 113
Type: CDS
Position: Chr03:12552610..12552675 (+ strand)
Length: 66
Type: CDS
Position: Chr03:12552809..12552980 (+ strand)
Length: 172
Type: CDS
Position: Chr03:12554438..12554527 (+ strand)
Length: 90
Type: CDS
Position: Chr03:12554835..12554959 (+ strand)
Length: 125
Type: CDS
Position: Chr03:12555112..12555177 (+ strand)
Length: 66
Type: CDS
Position: Chr03:12555420..12555528 (+ strand)
Length: 109
Type: CDS
Position: Chr03:12555608..12555709 (+ strand)
Length: 102
Type: CDS
Position: Chr03:12556263..12556343 (+ strand)
Length: 81
Type: CDS
Position: Chr03:12556414..12556584 (+ strand)
Length: 171
Type: CDS
Position: Chr03:12557410..12557649 (+ strand)
Length: 240
Type: CDS
Position: Chr03:12557650..12558283 (+ strand)
Length: 634
Type: three_prime_UTR


>Vigan.03G117100.01
ATTTCTGTTT TATAGGAATT GACTTGAATT GAGCAATGGG AGAATTGAAG TCTCTGCTTC GTCTTCATCT GCTCTGCAAT
TTTGCAGACT GAATTGAAGA GAAGGGAACA CGAATCTTCA GATAAACCCT CAAACTAAGT GTTCAGGTTC CGACAAACAG
ATACGTATAT TTGAAGAAAC AAACGACCGG CCGTTTTGTT CCTTAAAAAA TTGTGGGTCT GCAACAAAAA CAGGGACGAG
GTTGGTGTGA ACCTTAGATC TTGGTTTGGG AATGGCGAGG GGTAGTAGAT CAGTGACGAG TAGCAAGTGG AGGCACTGCC
ACCCTTCCTA TTACCTGAAG CGCCCGAAGC GTCTAGCTTT GCTCTTCATT GGTTTCGTTT GCGTTTCTTT TGTTGTGTGG
GACCGTCAAA CCCTGGTCAG AGAGCACCAG GTTGAAGTTT CTGAGCTGCG GAAAGAAGTG ACTGATTTGG CAAATTTGCT
GAGTGAGTTA AATAACAAAC AAGGTACTTC TGGGAAGATT GACCTGAGTA CTAAAGTTAC CAGGTCCAGT AAAGAGGTGC
TAGATGATCC CATTGATATC CAGAGGAGGG AAAAAGTAAA AGAAGCAATG CTTCATGCTT GGGGATCTTA TGAAAAGTAT
GCATGGGGCC AGGATGAACT TCAGCCACAA TCAAAGAGTG GTGTCAATAG CTTCGGAGGT CTTGGAGCAA CATTAATAGA
TTCTCTTGAT ACGCTATATA TTATGGGTCT CAATGAGCAG TTTCAGAAGG CACGAGAATG GGTTGCAAAC ACTTTGGATT
TTAACAAGGA TTACGAAGCA AGTGTTTTTG AGACAACCAT AAGAGTAGTA GGTGGTCTTC TTAGTGCATA TGATCTTTCG
GGGGACAAAG TTTTTCTTGA CAAAGCTAGA GAAATTGCAG ACAGATTGCT GCCTGCATGG AATACGCCTA CAGGAATTCC
TTACAACATC ATTAATTTGT CACATGGACG AGCACACAAC CCTAGTTGGA CTGGGGGTGA GAGTATCTTG GCAGATTCTG
GCACTGAACA ACTGGAATTC ATTGTTCTAT CTCAAAGGAC TGGAGACCCA AAGTATCAGC AGAAGGTGGA AAACGTAATT
ATCCAGCTAA ATAAAACATT TCCTGGTGAT GGATTACTTC CCATCTACAT TAATCCTCAT AGTGGGGCAG CAGGCTACTC
TCCTATCACA TTTGGGGCCA TGGGTGATAG TTTTTATGAG TACTTGCTCA AAGTTTGGAT ACAAGGGAAT AAGACATCGG
TCGTAAAACA TTATAGAGAT ATGTGGGAGA AATCAATGAA AGGTCTGTTA AGTTTGATTC GGAGATCAAC ACCATCTTCT
TTTGCTTATA TATGTGAAAA GAATGGGGGA TCTCTCACAG ACAAAATGGA TGAACTAGCA TGCTTTGCTC CGGGGATGAT
TGCATTGGGA TCATTTGGTT ACAGTGCTGC TGAGGATTCA CAGAAGTTTC TGTCACTAGC AGAAGAGCTT GCTTGGACAT
GTTATAACTT CTACCAATCA ACTCCAACGA AATTGGCTGG AGAGAACTAT TTCTTTCATT CTGGGCAGGA CATGAGTGTG
GGCACATCAT GGAACATACT GAGGCCAGAG ACAGTTGAGT CCCTCTTTTA CCTTTGGCGT CTAACTGGCA ACAAAACATA
CCAAGAATGG GGTTGGAATA TATTTCAAGC TTTTGAGAAG AACTCCCGCA TAGAGTCAGG CTATGTTGGA CTGAAGGATG
TTAATAGTGG GGTCAAAGAC AACATGATGC AAAGCTTCTT TCTTGCAGAG ACCCTGAAAT ATTTTTATCT TCTCTTCTCT
CCTTCTTCAG TCATCCCATT AGATGAATGG GTATTCAACA CAGAAGCCCA CCCTCTGAGG ATTGTGACCA GAAATGAAGG
GGGACTATAT AAGAATTTAA ATGAGAAGCA AAAACCTTTT TCTAGAATAG GTGGCAGAAA AGAAGGTCGA TCAGGTTAGA
TATCCATTCT TCTCTAATCA TTGCTGATTG AACCCCTTTT ACCAAAACTG TAGAACAGCA GTTTGTTCTA TTATGGTGGC
TTGTAAGATG TCAGAATTTT CTCATTGGGA GGAGGTTGAG GCTGGGAGGG GTAATAAGGG TTCATTCAGC CACAAAACAC
CATCTAATAT AGGAAATAGT TCCTCATTGA TGTTCTTAAA ATGGGTTTAT TCAAGGTGAA ACTGAACTTT GATTGATGAA
TGACCCTTCT GAAATTCACT GCTAGGAGCT TGTTGCCCTT TATTTTTTAT TATATTTTTC TGGAACCAAA TTTTCAGGGT
TCTATTGAGG CAATATATCT ACGAAATACA AGATAATCCT TGCATGTTTA CCATTTTCTT TATATTGCAT TACTTGTTAC
TGAATTTTGT GAACAGCAAG ATAGTTATGG TATTATAAGT GGTTCTGTCT TCAACCATTT TCTAGGTTTT CTTTTCGACA
AGAAAGAAAA CCTTCATTTT TTGTTGTCTG TGAACATGGT TGATATCACT TTGATGTCTG TCCATTAATA TTAATATTTG
GAAGAATTAA CCATACAGTT ATTTCTTGGG GATCACTTTT GCCAAGAAAA TTAAATATAG GAACAAAATC TAC

>Vigan.03G117100.01
ATGGCGAGGG GTAGTAGATC AGTGACGAGT AGCAAGTGGA GGCACTGCCA CCCTTCCTAT TACCTGAAGC GCCCGAAGCG
TCTAGCTTTG CTCTTCATTG GTTTCGTTTG CGTTTCTTTT GTTGTGTGGG ACCGTCAAAC CCTGGTCAGA GAGCACCAGG
TTGAAGTTTC TGAGCTGCGG AAAGAAGTGA CTGATTTGGC AAATTTGCTG AGTGAGTTAA ATAACAAACA AGGTACTTCT
GGGAAGATTG ACCTGAGTAC TAAAGTTACC AGGTCCAGTA AAGAGGTGCT AGATGATCCC ATTGATATCC AGAGGAGGGA
AAAAGTAAAA GAAGCAATGC TTCATGCTTG GGGATCTTAT GAAAAGTATG CATGGGGCCA GGATGAACTT CAGCCACAAT
CAAAGAGTGG TGTCAATAGC TTCGGAGGTC TTGGAGCAAC ATTAATAGAT TCTCTTGATA CGCTATATAT TATGGGTCTC
AATGAGCAGT TTCAGAAGGC ACGAGAATGG GTTGCAAACA CTTTGGATTT TAACAAGGAT TACGAAGCAA GTGTTTTTGA
GACAACCATA AGAGTAGTAG GTGGTCTTCT TAGTGCATAT GATCTTTCGG GGGACAAAGT TTTTCTTGAC AAAGCTAGAG
AAATTGCAGA CAGATTGCTG CCTGCATGGA ATACGCCTAC AGGAATTCCT TACAACATCA TTAATTTGTC ACATGGACGA
GCACACAACC CTAGTTGGAC TGGGGGTGAG AGTATCTTGG CAGATTCTGG CACTGAACAA CTGGAATTCA TTGTTCTATC
TCAAAGGACT GGAGACCCAA AGTATCAGCA GAAGGTGGAA AACGTAATTA TCCAGCTAAA TAAAACATTT CCTGGTGATG
GATTACTTCC CATCTACATT AATCCTCATA GTGGGGCAGC AGGCTACTCT CCTATCACAT TTGGGGCCAT GGGTGATAGT
TTTTATGAGT ACTTGCTCAA AGTTTGGATA CAAGGGAATA AGACATCGGT CGTAAAACAT TATAGAGATA TGTGGGAGAA
ATCAATGAAA GGTCTGTTAA GTTTGATTCG GAGATCAACA CCATCTTCTT TTGCTTATAT ATGTGAAAAG AATGGGGGAT
CTCTCACAGA CAAAATGGAT GAACTAGCAT GCTTTGCTCC GGGGATGATT GCATTGGGAT CATTTGGTTA CAGTGCTGCT
GAGGATTCAC AGAAGTTTCT GTCACTAGCA GAAGAGCTTG CTTGGACATG TTATAACTTC TACCAATCAA CTCCAACGAA
ATTGGCTGGA GAGAACTATT TCTTTCATTC TGGGCAGGAC ATGAGTGTGG GCACATCATG GAACATACTG AGGCCAGAGA
CAGTTGAGTC CCTCTTTTAC CTTTGGCGTC TAACTGGCAA CAAAACATAC CAAGAATGGG GTTGGAATAT ATTTCAAGCT
TTTGAGAAGA ACTCCCGCAT AGAGTCAGGC TATGTTGGAC TGAAGGATGT TAATAGTGGG GTCAAAGACA ACATGATGCA
AAGCTTCTTT CTTGCAGAGA CCCTGAAATA TTTTTATCTT CTCTTCTCTC CTTCTTCAGT CATCCCATTA GATGAATGGG
TATTCAACAC AGAAGCCCAC CCTCTGAGGA TTGTGACCAG AAATGAAGGG GGACTATATA AGAATTTAAA TGAGAAGCAA
AAACCTTTTT CTAGAATAGG TGGCAGAAAA GAAGGTCGAT CAGGTTAG

>Vigan.03G117100.01
MARGSRSVTS SKWRHCHPSY YLKRPKRLAL LFIGFVCVSF VVWDRQTLVR EHQVEVSELR KEVTDLANLL SELNNKQGTS
GKIDLSTKVT RSSKEVLDDP IDIQRREKVK EAMLHAWGSY EKYAWGQDEL QPQSKSGVNS FGGLGATLID SLDTLYIMGL
NEQFQKAREW VANTLDFNKD YEASVFETTI RVVGGLLSAY DLSGDKVFLD KAREIADRLL PAWNTPTGIP YNIINLSHGR
AHNPSWTGGE SILADSGTEQ LEFIVLSQRT GDPKYQQKVE NVIIQLNKTF PGDGLLPIYI NPHSGAAGYS PITFGAMGDS
FYEYLLKVWI QGNKTSVVKH YRDMWEKSMK GLLSLIRRST PSSFAYICEK NGGSLTDKMD ELACFAPGMI ALGSFGYSAA
EDSQKFLSLA EELAWTCYNF YQSTPTKLAG ENYFFHSGQD MSVGTSWNIL RPETVESLFY LWRLTGNKTY QEWGWNIFQA
FEKNSRIESG YVGLKDVNSG VKDNMMQSFF LAETLKYFYL LFSPSSVIPL DEWVFNTEAH PLRIVTRNEG GLYKNLNEKQ
KPFSRIGGRK EGRSG*